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    • 35. 发明申请
    • METHOD FOR PREDICTING IMMUNE RESPONSE TO NEOPLASTIC DISEASE BASED ON mRNA EXPRESSION PROFILE IN NEOPLASTIC CELLS AND STIMULATED LEUKOCYTES
    • 基于神经细胞和刺激白血病细胞中mRNA表达谱的免疫应答预防方法
    • WO2006133399A1
    • 2006-12-14
    • PCT/US2006/022427
    • 2006-06-08
    • HITACHI CHEMICAL RESEARCH CENTER, INC.HITACHI CHEMICAL CO., LTD.MITSUHASHI, Masato
    • MITSUHASHI, Masato
    • C12Q1/70G01N33/53G01N33/00
    • G01N33/505C12Q1/6806C12Q1/6886C12Q2600/118C12Q2600/158G01N33/574
    • Tumor necrosis factor (TNF) is capable of inducing apoptosis by interacting with specific TNF receptors on the surface of cancer cells. Because multiple members of TNF ligand and receptor are present within each superfamily, over 300 different ligand-receptor combinations exist. Activated blood leukocytes produce TNF as part of the immune response to cancer, as well as producing chemokines to attract other leukocytes to the site. A method is disclosed of detecting significant induction of a variety of TNF superfamily subtype and chemokine mRNAs in blood leukocytes when whole blood is exposed to heat-aggregated IgG or anti-T cell receptor antibodies as a model of immune system interactions. Substantial individual-to-individual variation is observed in TNF subtypes and chemokines induced. Since peripheral blood leukocytes are the supply of anti-cancer immune cells, the quantitation of ex vivo inducibility of appropriate TNF ligands and chemokines in blood will be useful in individualized cancer immunotherapy. If the tumor mass is small, such as with early invisible metastatic lesions, appropriate TNF assaults may be sufficient to prevent relapse.
    • 肿瘤坏死因子(TNF)能够通过与癌细胞表面的特异性TNF受体相互作用诱导细胞凋亡。 由于TNF配体和受体的多个成员存在于每个超家族中,所以存在超过300种不同的配体 - 受体组合。 活化的血液白细胞产生TNF作为对癌症的免疫应答的一部分,以及产生趋化因子以吸引其他白细胞到该部位。 公开了当将全血暴露于作为免疫系统相互作用的模型的热聚集的IgG或抗T细胞受体抗体时,检测血白细胞中各种TNF超家族亚型和趋化因子mRNA的显着诱导的方法。 在TNF亚型和趋化因子诱导中观察到显着的个体与个体差异。 由于外周血白细胞是抗癌免疫细胞的供应,血液中适当的TNF配体和趋化因子的离体诱导能力的定量将可用于个体化的癌症免疫治疗。 如果肿瘤质量小,如早期隐形转移性病变,则适当的TNF攻击可能足以防止复发。
    • 37. 发明申请
    • METHOD FOR COLLECTING AND USING NUCLEAR MRNA
    • 收集和使用核MRNA的方法
    • WO02066637A8
    • 2003-10-30
    • PCT/US0149498
    • 2001-10-25
    • HITACHI CHEMICAL RES CT INCHITACHI CHEMICAL CO LTDHITACHI LTDMITSUHASHI MASATO
    • MITSUHASHI MASATO
    • G01N33/53C12N15/09C12N15/10C12Q1/68G01N33/566G01N37/00
    • C12Q1/6809C12N15/1017
    • Conventional gene expression systems and purification methods target mRNA present throughout the entire cell and, thus, their results show the sum of newly transcribed mRNA as well as digested mRNA. Thus, it was previously difficult to detect expression of new mRNA under conditions that digestion of mRNA is in progress. Further, when a large amount of mRNA is already present, it is difficult to detect a slight change in the quantity of mRNA, and thus sensitivity is low. A new method is developed by focusing on the fact that newly synthesized mRNA is confined inside the nucleus. Cells are captured on a membrane and then treated by a cell membrane permeation solution such as NP-40, thereby increasing permeability to cell membranes. After the cytoplasm is washed, nuclei are dissolved with a cell dissolving solution, and then mRNA can be successfully recovered from the thus-obtained solution. This method is very simple, and only 2-3 minutes extra time is required, but a large number of specimens can be treated and the method can be incorporated into an automated system. Thus, this method is likely to be considered to be a standard method of treating a sample for a gene expression analysis, particularly for RT-PCR.
    • 传统的基因表达系统和纯化方法靶向整个细胞中的mRNA,因此,它们的结果显示新转录的mRNA以及消化的mRNA的总和。 因此,以前难以在正在进行mRNA消化的条件下检测新mRNA的表达。 此外,当已经存在大量mRNA时,难以检测mRNA的量的轻微变化,因此灵敏度低。 通过关注新合成的mRNA被限制在核内的事实来开发新的方法。 将细胞捕获在膜上,然后用细胞膜渗透溶液如NP-40处理,从而增加细胞膜的通透性。 细胞质洗涤后,用细胞溶解溶液溶解细胞核,然后从所得溶液中成功地回收mRNA。 这种方法非常简单,只需要2-3分钟的时间,但可以处理大量的样本,并且该方法可以并入自动化系统。 因此,该方法可能被认为是用于基因表达分析的标准方法,特别是对于RT-PCR。
    • 38. 发明申请
    • METHOD FOR COLLECTING AND USING NUCLEAR MRNA
    • 收集和使用核MRNA的方法
    • WO2002066637A2
    • 2002-08-29
    • PCT/US2001/049498
    • 2001-10-25
    • HITACHI CHEMICAL RESEARCH CENTER, INC.HITACHI CHEMICAL CO., LTD.HITACHI, LTD.MITSUHASHI, Masato
    • MITSUHASHI, Masato
    • C12N15/10
    • C12Q1/6809C12N15/1017
    • Conventional gene expression systems and purification methods target mRNA present throughout the entire cell and, thus, their results show the sum of newly transcribed mRNA as well as digested mRNA. Thus, it was previously difficult to detect expression of new mRNA under conditions that digestion of mRNA is in progress. Further, when a large amount of mRNA is already present, it is difficult to detect a slight change in the quantity of mRNA, and thus sensitivity is low. A new method is developed by focusing on the fact that newly synthesized mRNA is confined inside the nucleus. Cells are captured on a membrane and then treated by a cell membrane permeation solution such as NP-40, thereby increasing permeability to cell membranes. After the cytoplasm is washed, nuclei are dissolved with a cell dissolving solution, and then mRNA can be successfully recovered from the thus-obtained solution. This method is very simple, and only 2-3 minutes extra time is required, but a large number of specimens can be treated and the method can be incorporated into an automated system. Thus, this method is likely to be considered to be a standard method of treating a sample for a gene expression analysis, particularly for RT-PCR.
    • 传统的基因表达系统和纯化方法靶向整个细胞中的mRNA,因此,它们的结果显示新转录的mRNA以及消化的mRNA的总和。 因此,以前难以在正在进行mRNA消化的条件下检测新mRNA的表达。 此外,当已经存在大量mRNA时,难以检测mRNA的量的轻微变化,因此灵敏度低。 通过关注新合成的mRNA被限制在核内的事实来开发新的方法。 将细胞捕获在膜上,然后用细胞膜渗透溶液如NP-40处理,从而增加细胞膜的通透性。 细胞质洗涤后,用细胞溶解溶液溶解细胞核,然后从所得溶液中成功地回收mRNA。 这种方法非常简单,只需要2-3分钟的时间,但可以处理大量的样本,并且该方法可以并入自动化系统。 因此,该方法可能被认为是用于基因表达分析的标准方法,特别是对于RT-PCR。
    • 40. 发明申请
    • OLIGOPROBE DESIGNSTATIONS: A COMPUTERIZED METHOD FOR DESIGNING OPTIMAL OLIGONUCLEOTIDE PROBES AND PRIMERS
    • OLIGOPROBE设计:一种用于设计最佳寡核苷酸探针和引物的计算机方法
    • WO1994011837A1
    • 1994-05-26
    • PCT/US1993010507
    • 1993-11-08
    • HITACHI CHEMICAL COMPANY, LTD.MITSUHASHI, MasatoCOOPER, AllanWATERMAN, MichaelPEVZNER, Pavel
    • HITACHI CHEMICAL COMPANY, LTD.
    • G06F15/42
    • C12N15/10G06F19/20G06F19/22
    • There is disclosed herein an invention which relates to the fields of genetic engineering, microbiology, and computer science, that allows a user, whether a molecular biologist or a clinical diagnostician, to calculate and design extremely specific oligonucleotide sequences for DNA and mRNA hybridization procedures. The sequences designed with this invention may be used for medical diagnostic kits, DNA indentification, and potentially continuous monitoring of metabolic processes in human beings. The key features design oligonucleotide sequences based on the GenBank database of DNA and mRNA sequences and examine candidate sequences for specificity or commonality with respect to a user-selected experimental preparation. Two models are available: a Mismatch Model, that employs hashing and continuous seed filtration, and an H-site Model, that analyzes candidate sequences for their binding specificity relative to some known set of mRNA or DNA sequences. The preferred embodiment of this computerized design tool is written in the Borland C++ language and runs under Microsoft Windows on IBM compatible personal computers.
    • 本文公开了一种涉及遗传工程,微生物学和计算机科学领域的发明,其允许用户(无论是分子生物学家还是临床诊断学家)计算和设计用于DNA和mRNA杂交程序的特异性寡核苷酸序列。 本发明设计的序列可用于医学诊断试剂盒,DNA鉴定和人类代谢过程的潜在连续监测。 关键特征是基于DNA和mRNA序列的GenBank数据库的设计寡核苷酸序列,并检查相对于用户选择的实验制备的特异性或共同性的候选序列。 有两种模型可用:使用散列和连续种子过滤的不匹配模型和H位点模型,它们相对于一些已知的一组mRNA或DNA序列分析其结合特异性的候选序列。 该计算机化设计工具的优选实施例是用Borland C ++语言编写的,并且在IBM兼容的个人计算机上的Microsoft Windows TM下运行。