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    • 6. 发明申请
    • Methods for nucleic acid and polypeptide similarity search employing content addressable memories
    • 使用内容可寻址存储器的核酸和多肽相似性检索方法
    • US20060020397A1
    • 2006-01-26
    • US10896771
    • 2004-07-21
    • Bahram Kermani
    • Bahram Kermani
    • G06K9/00
    • G16B30/00
    • This invention is directed to systems and methods for comparing the similarity of biopolymer sequences. Algorithms useful in the systems and methods of the invention include (a) parsing one or more biopolymer reference sequences to produce a plurality of reference subsequences; (b) storing the plurality of reference subsequence to a plurality of CAM address locations; (c) parsing a query sequence to produce a plurality of query subsequences; (d) searching the plurality of reference subsequences stored in the plurality of CAM address locations with the plurality of query subsequences, and (e) producing an output of CAM address locations containing at least one match, the at least one match indicating sequence similarity between the reference subsequence stored in the CAM address location and the query subsequence producing the at least one match.
    • 本发明涉及用于比较生物聚合物序列的相似性的系统和方法。 在本发明的系统和方法中有用的算法包括(a)解析一个或多个生物聚合物参考序列以产生多个参考子序列; (b)将多个参考子序列存储到多个CAM地址位置; (c)解析查询序列以产生多个查询子序列; (d)利用所述多个查询子序列搜索存储在所述多个CAM地址位置中的所述多个参考子序列,以及(e)产生包含至少一个匹配的CAM地址位置的输出,所述至少一个匹配指示 存储在CAM地址位置中的参考子序列和产生至少一个匹配的查询子序列。