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1. 发明申请

US20130122504A1 Expression Levels of COL4A3BP and other Markers Correlating with Progression or Non-Progression of Bladder Cancer 审中-公开
标题翻译： COL4A3BP和其他与膀胱癌进展或非进展相关的标志物的表达水平
公开(公告)号：US20130122504A1
公开(公告)日：2013-05-16
申请号：US13316733
申请日：2011-12-12
申请人： Lars Dyrskjot Andersen , Torben Falck Orntoft , Joseph A. Sorge , Alexey Novoradovsky
发明人： Lars Dyrskjot Andersen , Torben Falck Orntoft , Joseph A. Sorge , Alexey Novoradovsky
IPC分类号： C12Q1/68
CPC分类号： C12Q1/6886 , C12Q2600/158
摘要： Disclosed is determining expression levels of protective or harmful markers for bladder cancer prognosis; particularly, determining the expression level of COL4A3BP alone or in combination with expression levels of MBNL2, FABP4, and NEK1 or other markers where increased expression levels of these protective markers relative to a control correlates with lack of bladder cancer progression and decreased expression levels correlate with bladder cancer progression or death. Also disclosed particularly is determining the expression level of COL4A1 alone or in combination with expression levels of UBE2C, BIRC5, COL18A1, KPNA2, MSN, ACTA2, and CDC25B or other markers where increased expression levels of these harmful markers relative to a control correlates with bladder cancer progression or death and decreased expression levels correlate with lack of bladder cancer progression. Also disclosed are signatures of protective and harmful markers to predict likelihood of bladder cancer progression or non-progression.
摘要翻译：公开了确定膀胱癌预后的保护性或有害标志物的表达水平; 特别是单独确定COL4A3BP的表达水平或与MBNL2，FABP4和NEK1或其他标志物的表达水平相结合，其中相对于对照组，这些保护性标志物的表达水平增加与膀胱癌进展的缺乏相关，并且降低的表达水平与膀胱癌进展或死亡。还特别公开了确定单独的COL4A1或与UBE2C，BIRC5，COL18A1，KPNA2，MSN，ACTA2和CDC25B或其他标志物的表达水平的组合的表达水平，其中这些有害标志物相对于对照相关的这些有害标志物的表达水平与膀胱相关癌症进展或死亡以及降低的表达水平与膀胱癌进展的缺乏相关。还公开了用于预测膀胱癌进展或非进展的可能性的保护性和有害标记物的标志。

2. 发明申请

US20130183345A1 Treatment of Bladder Cancer Following Detection of Expression Levels of Certain Progression Markers 审中-公开
标题翻译：检测某些进展标记的表达水平后膀胱癌的治疗
公开(公告)号：US20130183345A1
公开(公告)日：2013-07-18
申请号：US13791370
申请日：2013-03-08
申请人： Lars Dyrskjøt Andersen , Torben Falck Orntoft , Joseph A. Sorge , Alexey Novoradovsky
发明人： Lars Dyrskjøt Andersen , Torben Falck Orntoft , Joseph A. Sorge , Alexey Novoradovsky
IPC分类号： A61K35/74
CPC分类号： A61K35/74 , C12Q1/6886 , C12Q2600/118 , C12Q2600/158
摘要： Disclosed is determining expression levels of protective or harmful markers for bladder cancer prognosis and treatment; particularly, determining the expression levels of protective markers (COL4A3BP, MBNL2, FABP4, NEK1 and SKAP2) and harmful markers (COL4A1, UBE2C, BIRC5, COL18A1, KPNA2, MSN, ACTA2, and CDC25B) and making treatment decisions in consideration of increased or decreased risk of progression based on the marker expression levels.
摘要翻译：公开了确定膀胱癌预后和治疗的保护性或有害标志物的表达水平; 特别是确定保护性标记（COL4A3BP，MBNL2，FABP4，NEK1和SKAP2）和有害标记（COL4A1，UBE2C，BIRC5，COL18A1，KPNA2，MSN，ACTA2和CDC25B）的表达水平，并考虑到增加或基于标记物表达水平降低进展的风险。

3. 发明授权

US08383343B2 Methods of enriching for and identifying polymorphisms 有权
标题翻译：富集和鉴定多态性的方法
公开(公告)号：US08383343B2
公开(公告)日：2013-02-26
申请号：US10391090
申请日：2003-03-18
申请人： Joseph A. Sorge
发明人： Joseph A. Sorge
IPC分类号： C12Q1/68
CPC分类号： C12N15/1072 , C12Q1/6827 , C12Q1/6869 , C12Q2565/519 , C12Q2565/531 , C12Q2533/101 , C12Q2522/101
摘要： The invention encompasses methods for enriching for and identifying a polymorphism within a nucleic acid sample either by separating a subset of a nucleic acid sample or by selectively replicating a subset of a nucleic acid sample such that the polymorphism is contained within a nucleic acid population with reduced complexity, and then identifying the polymorphism within the enriched nucleic acid sample. Methods also are disclosed for enriching for and identifying a polymorphism by contacting a nucleic acid sample that includes a subset of nucleic acid molecules having a sequence that binds to a sequence-specific binding activity with a molecule having a sequence-specific binding activity under conditions which permit specific binding, such that the subset of nucleic acid molecules bound to the activity is enriched for nucleic acid molecules having the sequence recognized by the sequence-specific binding activity, and detecting a polymorphism with respect to a reference sequence in the subset of nucleic acid molecules.
摘要翻译：本发明包括用于通过分离核酸样品的子集或通过选择性复制核酸样品的子集来使得核酸样品中的多态性富集和鉴定核酸样品中的多态性的方法，使得多态性包含在具有降低的核酸群体的核酸群体内复杂性，然后鉴定富集的核酸样品内的多态性。公开了通过使包含具有与序列特异性结合活性结合的序列的核酸分子的子集与具有序列特异性结合活性的分子的核酸样品接触的方法来丰富和鉴定多态性的方法，允许特异性结合，使得与活性结合的核酸分子的子集富含具有由序列特异性结合活性识别的序列的核酸分子，并且检测核酸子集中的参考序列的多态性分子。

4. 发明授权

US07858359B2 Method for tapping the immunological repertoire 失效
标题翻译：攻击免疫学曲目的方法
公开(公告)号：US07858359B2
公开(公告)日：2010-12-28
申请号：US11558384
申请日：2006-11-09
申请人： William D. Huse , Gregory P. Winter , Lutz Riechmann , Joseph A. Sorge , Richard A. Lerner
发明人： William D. Huse , Gregory P. Winter , Lutz Riechmann , Joseph A. Sorge , Richard A. Lerner
IPC分类号： C12N1/21
CPC分类号： C07K16/00 , A61K38/00 , C07K16/468 , C07K2317/56
摘要： The present invention relates to a method for isolating from the immunological gene repertoire a gene coding for a receptor having the ability to bind a preselected ligand. Receptors produced by the gene isolated by the method, particularly catalytic receptors, are also contemplated.
摘要翻译：本发明涉及从免疫基因库中分离编码具有结合预选配体的能力的受体的基因的方法。还考虑了通过该方法分离的基因产生的受体，特别是催化受体。

5. 发明申请

US20100248246A1 METHODS OF ENRICHING FOR AND IDENTIFYING POLYMORPHISMS 审中-公开
标题翻译：增强和鉴别多态性的方法
公开(公告)号：US20100248246A1
公开(公告)日：2010-09-30
申请号：US12749070
申请日：2010-03-29
申请人： Joseph A. Sorge , Ronald W. Davis
发明人： Joseph A. Sorge , Ronald W. Davis
IPC分类号： C12Q1/68
CPC分类号： C12N15/1072 , C12Q1/6827 , C12Q1/6869 , C12Q2565/519 , C12Q2565/531 , C12Q2533/101 , C12Q2522/101
摘要： The invention encompasses methods for enriching for and identifying a polymorphism within a nucleic acid sample either by separating a subset of a nucleic acid sample or by selectively replicating a subset of a nucleic acid sample such that the polymorphism is contained within a nucleic acid population with reduced complexity, and then identifying the polymorphism within the enriched nucleic acid sample. Methods also are disclosed for enriching for and identifying a polymorphism by contacting a nucleic acid sample that includes a subset of nucleic acid molecules having a sequence that binds to a sequence-specific binding activity with a molecule having a sequence-specific binding activity under conditions which permit specific binding, such that the subset of nucleic acid molecules bound to the activity is enriched for nucleic acid molecules having the sequence recognized by the sequence-specific binding activity, and detecting a polymorphism with respect to a reference sequence in the subset of nucleic acid molecules.
摘要翻译：本发明包括用于通过分离核酸样品的子集或通过选择性复制核酸样品的子集来使得核酸样品中的多态性富集和鉴定核酸样品中的多态性的方法，使得多态性包含在具有降低的核酸群体的核酸群体内复杂性，然后鉴定富集的核酸样品内的多态性。公开了通过使包含具有与序列特异性结合活性结合的序列的核酸分子的子集与具有序列特异性结合活性的分子的核酸样品接触的方法来丰富和鉴定多态性的方法，允许特异性结合，使得与活性结合的核酸分子的子集富含具有由序列特异性结合活性识别的序列的核酸分子，并且检测核酸子集中的参考序列的多态性分子。

6. 发明授权

US07585632B2 Compositions and methods for the detection of a nucleic acid using a cleavage reaction 有权
标题翻译：使用裂解反应检测核酸的组合物和方法
公开(公告)号：US07585632B2
公开(公告)日：2009-09-08
申请号：US11699736
申请日：2007-01-29
申请人： Joseph A. Sorge , Andrew Firmin , Scott Happe
发明人： Joseph A. Sorge , Andrew Firmin , Scott Happe
IPC分类号： C12Q1/68 , C07H21/02 , C07H21/04
CPC分类号： C12Q1/6844 , C12Q1/6823 , C12Q2525/307 , C12Q2565/101 , C12Q2521/301 , C12Q2525/161
摘要： The invention relates to compositions and methods for generating a signal indicative of the presence of a target nucleic acid in a sample utilizing a primer-probe duplex.
摘要翻译：本发明涉及使用引物 - 探针双链体产生指示样品中靶核酸存在的信号的组合物和方法。

7. 发明申请

US20080199935A1 Compositions and methods utilizing DNA polymerases 审中-公开
标题翻译：使用DNA聚合酶的组合物和方法
公开(公告)号：US20080199935A1
公开(公告)日：2008-08-21
申请号：US11644729
申请日：2006-12-22
申请人： Joseph A. Sorge , Holly Hogrefe , Connie J. Hansen
发明人： Joseph A. Sorge , Holly Hogrefe , Connie J. Hansen
IPC分类号： C12N9/12
CPC分类号： B82Y5/00 , B82Y10/00 , C12N9/1252
摘要： The invention features a novel isolated Family B DNA polymerase, a Thermococcus polymerase JDF-3, and mutant recombinant forms thereof. Mutant polymerases of the invention are deficient in 3′ to 5′ exonuclease activity and/or exhibit reduced discrimination against non-conventional nucleotides relative to the wild-type form of the polymerase.
摘要翻译：本发明的特征在于新的分离的家族B DNA聚合酶，热球菌聚合酶JDF-3及其突变体重组形式。本发明的突变型聚合酶相对于野生型形式的聚合酶，缺乏3'至5'核酸外切酶活性和/或表现出对非常规核苷酸的降低的鉴别。

8. 发明授权

US07361467B2 Methods for detection of a target nucleic acid by capture 有权
标题翻译：通过捕获检测靶核酸的方法
公开(公告)号：US07361467B2
公开(公告)日：2008-04-22
申请号：US11150775
申请日：2005-06-10
申请人： Joseph A. Sorge , Anne M. Whalen
发明人： Joseph A. Sorge , Anne M. Whalen
IPC分类号： C12Q1/68 , C12P19/34 , C07H21/02 , C07H21/04
CPC分类号： C12Q1/6823 , C12Q1/6816 , C12Q2521/301 , C12Q2531/113 , C12Q2521/307 , C12Q2525/161 , C12Q2525/301 , C12Q2561/109 , C12Q2565/519 , C12Q2561/101 , C12Q2521/107
摘要： The invention relates to a method of generating a signal indicative of the presence of a target nucleic acid in a sample, where the method includes forming a cleavage structure by incubating a sample comprising a target nucleic acid with a probe having a secondary structure that changes upon binding of the probe to the target nucleic acid and further comprising a binding moiety. The invention also includes the steps of cleaving the cleavage structure with a nuclease to release a nucleic acid fragment to generate a signal, wherein generation of the signal is indicative of the presence of a target nucleic acid in a sample, and detecting and/or measuring the amount of the fragment captured by binding of a binding moiety to a capture element on a solid support.The invention also relates to a method of detecting or measuring a target nucleic acid in a sample, where the method includes forming a cleavage structure by incubating a sample containing a target nucleic acid with a probe having a secondary structure that changes upon binding of the probe to a target nucleic acid and comprising a binding moiety, and cleaving the cleavage structure with a nuclease to generate a cleaved nucleic acid fragment and detecting and/or measuring the amount of the fragment captured by binding of a binding moiety to a capture element on a solid support.
摘要翻译：本发明涉及产生指示样品中目标核酸存在的信号的方法，其中该方法包括通过将包含靶核酸的样品与具有二级结构变化的探针一起孵育形成切割结构探针与靶核酸的结合并且还包含结合部分。本发明还包括用核酸酶切割切割结构以释放核酸片段以产生信号的步骤，其中产生信号指示样品中靶核酸的存在，以及检测和/或测量通过结合部分与固体支持物上的捕获元件结合捕获的片段的量。本发明还涉及一种检测或测量样品中的靶核酸的方法，其中该方法包括通过将含有靶核酸的样品与具有在探针结合后变化的二级结构的探针形成切割结构并且包含结合部分，并用核酸酶切割切割结构以产生切割的核酸片段，并通过结合部分与捕获元件的结合捕获的片段的量，并检测和/或测量坚实的支持。

9. 发明授权

US07109178B2 Method for ligating nucleic acids and molecular cloning 有权
公开(公告)号：US07109178B2
公开(公告)日：2006-09-19
申请号：US10057050
申请日：2002-01-25
申请人： Henry Ji , Alan Greener , Joseph A. Sorge , John Bauer , Richard Gibbs , Carsten-Peter Carstens
发明人： Henry Ji , Alan Greener , Joseph A. Sorge , John Bauer , Richard Gibbs , Carsten-Peter Carstens
IPC分类号： A61K31/711
CPC分类号： C12N9/00 , C12N15/10 , C12N15/64 , C12N15/66 , C12P19/34
摘要： The invention provides methods of covalently joining nucleic acid molecules and methods of molecular cloning. The methods provide either sequential or simultaneous ligation of flanking or vector nucleic acid molecules to nucleic acid insert molecules by topoisomerase and DNA ligase. The methods provide for directional and non-directional covalent joining and cloning of nucleic acid molecules.

10. 发明授权

US06893819B1 Methods for detection of a nucleic acid by sequential amplification 有权
标题翻译：通过连续扩增检测核酸的方法
公开(公告)号：US06893819B1
公开(公告)日：2005-05-17
申请号：US09717602
申请日：2000-11-21
申请人： Joseph A. Sorge
发明人： Joseph A. Sorge
IPC分类号： C12Q1/68 , C12P19/34
CPC分类号： C12Q1/6844 , C12Q1/6823 , C12Q2537/149 , C12Q2531/101 , C12Q2525/161
摘要： The invention relates to a method of detecting a target nucleic acid by linear amplification. The invention also relates to a method of detecting a target nucleic acid by amplification. The method of the invention includes the steps of forming at least a first cleavage structure comprising at least one flap, cleaving the cleavage structure with a cleavage means to release the at least one flap and detecting the at least one flap. In one embodiment of the invention, the method includes the additional steps of forming at least a second cleavage structure comprising the at least one released flap from the first cleavage structure cleaving the second cleavage structure with a cleavage means to release at least one flap from the second cleavage structure and detecting released flaps from the first or second cleavage structure.
摘要翻译：本发明涉及通过线性扩增检测靶核酸的方法。本发明还涉及通过扩增检测靶核酸的方法。本发明的方法包括以下步骤：至少形成包含至少一个瓣的第一切割结构，用裂解装置切割切割结构以释放至少一个瓣并检测至少一个瓣。在本发明的一个实施方案中，所述方法包括形成至少第二切割结构的附加步骤，所述至少第二切割结构包含来自第一切割结构的至少一个释放的翼片，其利用切割装置切割第二切割结构，以将至少一个翼片从第二裂解结构和从第一或第二裂解结构检测释放的瓣。

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