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    • 7. 发明申请
    • OPTICAL FINGERPRINTING OF NUCLEIC ACID SEQUENCES
    • 核酸序列的光学指纹
    • US20070148674A1
    • 2007-06-28
    • US11615695
    • 2006-12-22
    • Mark BERRESDavid FrischFredrick Blattner
    • Mark BERRESDavid FrischFredrick Blattner
    • C12Q1/68C12M3/00
    • G01N33/5308C12Q1/6816C12Q1/6837C12Q1/6869C12Q2565/601C12Q2565/513C12Q2522/101
    • The present invention provides methods and apparatus for the optical fingerprinting of nucleic acid molecules. In certain embodiments, the invention provides methods for labeling nucleic acid molecules using-site-specific nucleic acid binding partners that bind to nucleic acids without cleaving the molecule. The nucleic acid binding partners can be labeled directly with a fluorophore, such as a quantum dot (QD), or indirectly. Examples of suitable binding partners include cut-deficient restriction endonucleases (cdREs), transcription factors, the binding domains of nucleic acid polymerases, antibodies and the like. The methods disclosed make the assembly of fingerprint contigs easier and allows for digitizing the results so as to provide for easier computer manipulation and assembly. The invention also includes a microarray, the microarray designed to provide for easy deposition and high-throughput fingerprinting. The invention also provides for methods of using the microarrays. The invention also provides kits for the use of the invention.
    • 本发明提供了核酸分子的光学指纹图谱的方法和装置。 在某些实施方案中,本发明提供了使用与核酸结合但不裂解该分子的位点特异性核酸结合配偶体标记核酸分子的方法。 核酸结合配偶体可直接用荧光团(例如量子点(QD))或间接地标记。 合适的结合配偶体的实例包括切断缺陷型限制性内切核酸酶(cdRE),转录因子,核酸聚合酶的结合结构域,抗体等。 所公开的方法使得指纹重叠群的组装更容易,并允许数字化结果,从而提供更容易的计算机操纵和组装。 本发明还包括微阵列,微阵列被设计成提供易于沉积和高通量指纹。 本发明还提供了使用微阵列的方法。 本发明还提供了用于本发明的试剂盒。