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    • 53. 发明申请
    • CA125 gene and its use for diagnostic and therapeutic interventions
    • US20090035819A1
    • 2009-02-05
    • US11975668
    • 2007-10-19
    • Timothy O'BrienJohn BeardLowell Underwood
    • Timothy O'BrienJohn BeardLowell Underwood
    • C12P21/06C07H21/00C07K16/18C12N5/00
    • C07K14/705C07K16/3092
    • The CA125 gene has been cloned and multiple repeat sequences as well as the carboxy terminus have been identified. The CA125 molecule comprises three major domains: an extracellular amino terminal domain (Domain 1); a large multiple repeat domain (Domain 2); and a carboxy terminal domain (Domain 3) which includes a transmembrane anchor with a short cytoplasmic domain. The amino terminal domain is assembled by combining five genomic exons, four very short amino terminal sequences and one extraordinarily large exon. This domain is dominated by its capacity for O-glycosylation and its resultant richness in serine and threonine residues. Additionally, an amino terminal extension is present, which comprises four genomic exons. The amino acid composition of the amino terminal extension was found to be consistent with the amino acid composition of the amino terminal domain. The molecular structure is dominated by a repeat domain comprising 156 amino acid repeat units, which encompass the epitope binding sites. More than 60 repeat units have been identified, sequenced, and contiguously placed in the CA125 domain structure. The repeat units encompass an interactive disulfide bridged C-enclosure and the site of OC125 and M11 binding. The repeat sequences demonstrated 70-85% homology to each other. Expression of the repeats was demonstrated in E. coli. The CA125 molecule is anchored at its carboxy terminal through a transmembrane domain and a short cytoplasmic tail. The carboxy terminal also contains a proteolytic cleavage site approximately 50 amino acids upstream from the transmembrane domain, which allows for proteolytic cleavage and release of the CA125 molecule. Any one of the repeat domains has the potential for use as a new gold standard for detecting and monitoring the presence of the CA125 antigen. Further, the repeat domains or other domains, especially the c-terminal to the repeat domain also provide a basis for the development of a vaccine, which would be useful for the treatment of ovarian cancer and other carcinomas where CA125 is elevated.
    • 55. 发明申请
    • Repeat sequences of the ca125 gene and their use for diagnostic and therapeutic interventions
    • US20070015907A1
    • 2007-01-18
    • US10475117
    • 2002-04-12
    • Timothy O'BrienJohn BeardLowell Underwood
    • Timothy O'BrienJohn BeardLowell Underwood
    • C07K14/705C07H21/04
    • C07K14/47A61K38/00C12Q1/6886C12Q2600/158
    • The CA125 gene has been cloned and multiple repeat sequences as well as the carboxy terminus have been identified. The CA125 molecule comprises three major domains: an extracellular amino terminal domain (Domain 1); a large multiple repeat domain (Domain 2); and a carboxy terminal domain (Domain 3) which includes a transmembrane anchor with a short cytoplasmic domain. The amino terminal domain is assembled by combining five genomic exons, four very short amino terminal sequences and one extraordinarily large exon. This domain is dominated by its capacity for O-glycosylation and its resultant richness in serine and threonine residues. Additionally, an amino terminal extension is present, which comprises four genomic exons. The amino acid composition of the amino terminal extension was found to be consistent with the amino acid composition of the amino terminal domain. The molecular structure is dominated by a repeat domain comprising 156 amino acid repeat units, which encompass the epitope binding sites. More than 60 repeat units have been identified, sequenced, and contiguously placed in the CA125 domain structure. The repeat units encompass an interactive disulfide bridged C-enclosure and the site of OC125 and M11 binding. The repeat sequences demonstrated 70-85% homology to each other. Expression of the repeats was demonstrated in E. coli. The CA125 molecule is anchored at its carboxy terminal through a transmembrane domain and a short cytoplasmic tail. The carboxy terminal also contains a proteolytic cleavage site approximately 50 amino acids upstream from the transmembrane domain, which allows for proteolytic cleavage and release of the CA125 molecule. Any one of the repeat domains has the potential for use as a new gold standard for detecting and monitoring the presence of the CA125 antigen. Further, the repeat domains or other domains, especially the c-terminal to the repeat domain also provide a basis for the development of a vaccine, which would be useful for the treatment of ovarian cancer and other carcinomas where CA125 is elevated.
    • 57. 发明授权
    • System and method for reference count regeneration
    • 参考计数再生的系统和方法
    • US07130983B1
    • 2006-10-31
    • US10738946
    • 2003-12-17
    • George Franklin DeTar, Jr.John Timothy O'Brien
    • George Franklin DeTar, Jr.John Timothy O'Brien
    • G06F12/06
    • G06F3/0656G06F3/0617G06F3/0676G06F11/1441
    • In a disk-based data storage system, a controller configured to control a reference count regeneration operation, the controller includes a control register, an address register, a status register, a boundary register, and an embedded memory. The control register may be configured to set up and initiate program instructions that are executed by at least one processor. The address register may be configured as a cache address pointer and correspond to at least one of a sort output list pointer, a virtual track table input list pointer, a reference list pointer, a track number table pointer, and a reference count mis-compare list pointer. The status register may be configured to indicate status of a routine. The routine includes at least one of a radix sort, a reference list count, a combine counts, and a merger of the reference list count into the TNT to generate an updated TNT. The boundary register corresponds to a disk cache memory that may be configured to store at least one of a reference list, a reference list count length, and a mis-compare list. The embedded memory may be configured to perform at least one buffer operation in connection with the routine.
    • 在基于磁盘的数据存储系统中,控制器被配置为控制参考计数再生操作,所述控制器包括控制寄存器,地址寄存器,状态寄存器,边界寄存器和嵌入存储器。 控制寄存器可以被配置为建立和启动由至少一个处理器执行的程序指令。 地址寄存器可以被配置为高速缓存地址指针,并且对应于排序输出列表指针,虚拟轨道表输入列表指针,参考列表指针,轨道号表指针和参考计数误比较中的至少一个 列表指针。 状态寄存器可以被配置为指示例程的状态。 例程包括基数排序,参考列表计数,组合计数和参考列表计数合并到TNT中以生成更新的TNT中的至少一个。 边界寄存器对应于可被配置为存储参考列表,参考列表计数长度和误比较列表中的至少一个的磁盘高速缓存存储器。 嵌入式存储器可以被配置为执行与该例程有关的至少一个缓冲器操作。