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    • 2. 发明授权
    • Fluorescent nucleoside analogs and combinatorial fluorophore arrays comprising same
    • 荧光核苷类似物和包含其的组合荧光团阵列
    • US06479650B1
    • 2002-11-12
    • US09461636
    • 1999-12-14
    • Eric T. Kool
    • Eric T. Kool
    • C07H1500
    • C07H21/00C07H7/06Y10S436/80Y10T436/143333
    • The present invention provides fluorescent nucleoside analogs which comprise a fluorescent cyclic compound joined to a carbon of a sugar molecule such as pentose, hexose, ribose or deoxyribose or analogs thereof in either an &agr; or &bgr; configuration. The subject compounds are useful as probes in the study of the structure and dynamics of nucleic acids and their complexes with proteins. In addition, the subject compounds are useful in any technique which uses labeled oligonucleotides for detection. Non-fluorescent spacer molecules in which a cyclohexane, cyclohexene, decalin, or benzene is joined to a carbon of a sugar moiety such as pentose, hexose, ribose or deoxyribose are also provided. Also provided are the 5′ dimethoxytrityl-3′-O-phosphoramidite derivatives, suitable for incorporation into oligonucleotides by automated synthesizers. Combinatorial fluorophore array (CFA) libraries comprising oligomers of the subject nucleoside analogs attached to one or more solid supports are also provided as are methods of selecting fluorophores from the CFA libraries. The present invention also provides oligonucleotide analogs comprising one or more of the subject nucleoside analogs in place of a DNA or RNA base.
    • 本发明提供荧光核苷类似物,其包含以α或β构型连接到糖分子如戊糖,己糖,核糖或脱氧核糖或其类似物的碳的荧光环化合物。 主题化合物可用作研究核酸及其与蛋白质的配合物的结构和动力学的探针。 此外,本发明化合物可用于使用标记的寡核苷酸进行检测的任何技术。 还提供了其中环己烷,环己烯,十氢化萘或苯连接到糖部分的碳如戊糖,己糖,核糖或脱氧核糖的非荧光间隔分子。 还提供了适用于通过自动合成仪并入寡核苷酸的5'二甲氧基三苯甲基-3'-O-亚磷酰胺衍生物。 还提供了包含与一种或多种固体支持物连接的受试者核苷类似物的寡聚体的组合荧光团阵列(CFA)文库,其方法是从CFA文库中选择荧光团。 本发明还提供了包含一种或多种目标核苷类似物代替DNA或RNA碱基的寡核苷酸类似物。
    • 6. 发明授权
    • KDO aldolase and condensation reactions employed therewith
    • KDO醛缩酶和与其一起使用的缩合反应
    • US06423834B1
    • 2002-07-23
    • US09247164
    • 1999-02-09
    • Chi-Huey WongTakeshi SugaiGwo-Jenn Shen
    • Chi-Huey WongTakeshi SugaiGwo-Jenn Shen
    • C07H1500
    • C12P19/02C07H7/027C12N9/88C12P7/58C12P9/00Y10S435/822
    • Aureobacterium barkerei strain KDO-37-2 (ATCC 49977) and KDO aldolase (EC 4.1.2.23) isolated therefrom are disclosed. The KDO aldolase is further disclosed to have a broad substrate specificity with respect to its reverse reaction, i.e. the condensation of aldoses with pyruvate to form a wide range of 2-keto-3-deoxy-onic acids, including 2-keto-3-deoxy-nonulosonic acid, 2-keto-3-deoxy-octulosonic acid, 2-keto-3-deoxy-heptulosonic acid, and 2-keto-3-deoxy-hexulosonic acid. In particular, 3-deoxy-D-manno-2-octulosonic acid (D-KDO), a vital component of lipopolysaccharides found in the bacterial outer membrane may be synthesized from D-arabinose and pyruvate in 67% yield. Additionally, protected forms of the KDO aldolase products, e.g. hexaacetyl 2-keto-3-deoxy-nonulosonic acid and pentaacetyl 2-keto-3-deoxy-octulosonic acid, may be decarboxylated to form the corresponding 2-deoxy-aldoses, e.g. 2-deoxy-octulose and 2-deoxy-heptulose respectively.
    • 公开了从其分离的巴氏杆菌菌株KDO-37-2(ATCC 49977)和KDO醛缩酶(EC 4.1.2.23)。 进一步公开KDO醛缩酶相对于其逆反应具有广泛的底物特异性,即醛糖与丙酮酸的缩合形成宽范围的2-酮-3-脱氧ic酸,包括2-酮-3- 脱氧 - 非酮酸,2-酮-3-脱氧 - 八环酮酸,2-酮-3-脱氧 - 庚酮酸和2-酮-3-脱氧 - 己酸。 特别地,在D-细菌外膜中发现的脂多糖的重要组分3-脱氧-D-壬烯-2-辛酮酸(D-KDO)可由D-阿拉伯糖和丙酮酸合成,产率67%。 另外,保护形式的KDO醛缩酶产物,例如, 六乙酰基2-酮-3-脱氧 - 非酮酸和五乙酰基2-酮-3-脱氧 - 八环酸可以脱羧以形成相应的2-脱氧醛糖,例如, 2-脱氧 - 八酮糖和2-脱氧 - 七氟醚。
    • 7. 发明授权
    • Metalloligands for cleaving nucleic acids
    • 用于切割核酸的金属配体
    • US06403777B1
    • 2002-06-11
    • US09348225
    • 1999-07-06
    • James A. Cowan
    • James A. Cowan
    • C07H1500
    • C07H23/00
    • Transition metal complexes, referred to hereinafter as “metalloligands”, that catalyze the degradation of DNA and the cleavage of RNA at select sites are provided. In one embodiment, the metalloligand has the following structure: wherein R1 is an amino group, i.e. an NH, or an alkylamino group comprising 1 or 2 carbon atoms; wherein R2 is selected from the group consisting of an amino group, a hydroxyl group, i.e., O(H), an alkylamino group comprising 1 or 2 carbon atoms; and an alkylhydroxyl group comprising 1 or 2 carbon atoms; wherein J is a ligand which comprises at least one carbon-containing five-membered or six-membered ring structure; and wherein M is a transition metal ion which is bound via coordinate bonds to R1 and R2. In another embodiment the metalloligand has the following structure: wherein R1′ and R1″ are the same or different and wherein R1′ and R1″ are an amino group or an alkylamino group comprising 1 or 2 carbon atoms; wherein R2′ and R2″ are the same or different and wherein R2′ and R2″ are selected from the group consisting of an amino group, a hydroxyl group, an alkylamino group comprising 1 or 2 carbon atoms, and an alkylhydroxyl group comprising one or two carbon atoms; wherein J′ and J″ are the same or different and wherein J′ and J″ are ligands which comprise at least one carbon-containing five-membered or six-membered ring structure; and wherein M is a transition metal ion which is bound via coordinate bonds to R1′, R1″, R2′ and R2″. Methods of cleaving nucleic acids using the metalloligands are also provided.
    • 提供了以下称为“金属配体”的过渡金属络合物,其催化DNA的降解和选择位点处的RNA的切割。 在一个实施方案中,金属配体具有以下结构:其中R 1是氨基,即NH,或包含1或2个碳原子的烷基氨基; 其中R2选自氨基,羟基,即O(H),含有1或2个碳原子的烷基氨基; 和含有1或2个碳原子的烷基羟基; 其中J是包含至少一个含碳的五元或六元环结构的配体; 并且其中M是通过配位键与R 1和R 2结合的过渡金属离子。在另一个实施方案中,金属配体具有以下结构:其中R1'和R1“相同或不同,并且其中R1'和R1” 氨基或含有1或2个碳原子的烷基氨基; 其中R2'和R2“相同或不同,并且其中R2'和R2”选自氨基,羟基,包含1或2个碳原子的烷基氨基,和烷基羟基,包括 一个或两个碳原子; 其中J'和J“相同或不同,并且其中J'和J”是包含至少一个含碳五元或六元环结构的配体; 并且其中M是通过配位键与R1',R1“,R2'和R2”结合的过渡金属离子。还提供了使用金属配体切割核酸的方法。