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    • 5. 发明授权
    • Method of rational drug design based on ab initio computer simulation of
conformational features of peptides
    • 基于从头计算机模拟肽构象特征的合理药物设计方法
    • US5612895A
    • 1997-03-18
    • US427118
    • 1995-04-21
    • Vitukudi N. BalajiChandra U. Singh
    • Vitukudi N. BalajiChandra U. Singh
    • C07K16/00G06F17/50G06F19/16G06F15/42
    • C07K16/00G06F19/16
    • A method of rational drug design includes simulating polypeptides in a way that predicts the most probable secondary and/or tertiary structures of a polypeptide, e.g., an oligopeptide, without any presumptions as to the conformation of the underlying primary or secondary structure. The method involves computer simulation of the polypeptide, and more particularly simulating a real-size primary structure in an aqueous environment, shrinking the size of the polypeptide isobarically and isothermally, and expanding the simulated polypeptide to its real size in selected time periods. A useful set of tools, termed Balaji plots, energy conformational maps, and probability maps, assist in identifying those portions of the predicted peptide structure that are most flexible or most rigid. The rational design of novel compounds, useful as drugs, e.g., bioactive peptidomimetic compounds, and constrained analogs thereof, is thus made possible using the simulation methods and tools of the described invention.
    • 合理药物设计的方法包括以预测多肽(例如寡肽)的最可能的次要和/或三级结构的方式来模拟多肽,而没有关于下面的一级或二级结构的构象的任何推定。 该方法涉及多肽的计算机模拟,并且更具体地模拟水性环境中的实际一级结构,以等温和等温收缩多肽的大小,并在选定的时间段内将模拟多肽扩增至其实际大小。 一组有用的工具,称为Balaji图,能量构象图和概率图,有助于确定最灵活或最刚性的预测肽结构的那些部分。 因此,使用所述发明的模拟方法和工具可以合理地设计可用作药物的生物活性肽模拟化合物及其约束类似物的新化合物。
    • 6. 发明授权
    • Method of rational drug design based on AB initio computer simulation of
conformational features of peptides
    • 基于AB初步计算机模拟肽的构象特征的合理药物设计方法
    • US5579250A
    • 1996-11-26
    • US427987
    • 1995-04-24
    • Vitukudi N. BalajiChandra U. Singh
    • Vitukudi N. BalajiChandra U. Singh
    • C07K16/00G06F17/50G06F19/16
    • C07K16/00G06F19/16
    • A method of rational drug design includes simulating polypeptides in a way that predicts the most probable secondary and/or tertiary structures of a polypeptide, e.g., an oligopeptide, without any presumptions as to the conformation of the underlying primary or secondary structure. The method involves computer simulation of the polypeptide, and more particularly simulating a real-size primary structure in an aqueous environment, shrinking the size of the polypeptide isobarically and isothermally, and expanding the simulated polypeptide to its real size in selected time periods. A useful set of tools, termed Balaji plots, energy conformational maps, and probability maps, assist in identifying those portions of the predicted peptide structure that are most flexible or most rigid. The rational design of novel compounds, useful as drugs, e.g., bioactive peptidomimetic compounds, and constrained analogs thereof, is thus made possible using the simulation methods and tools of the described invention.
    • 合理药物设计的方法包括以预测多肽(例如寡肽)的最可能的次要和/或三级结构的方式来模拟多肽,而没有关于下面的一级或二级结构的构象的任何推定。 该方法涉及多肽的计算机模拟,并且更具体地模拟水性环境中的实际一级结构,以等温和等温缩小多肽的大小,并在选定的时间段内将模拟多肽扩增至其实际大小。 一组有用的工具,称为Balaji图,能量构象图和概率图,有助于确定最灵活或最刚性的预测肽结构的那些部分。 因此,使用所述发明的模拟方法和工具可以合理地设计可用作药物的生物活性肽模拟化合物及其约束类似物的新化合物。
    • 7. 发明授权
    • Compounds that modulate endothelin activity
    • 调节内皮素活性的化合物
    • US5543521A
    • 1996-08-06
    • US180575
    • 1994-01-12
    • Ming F. ChanVitukudi N. Balaji
    • Ming F. ChanVitukudi N. Balaji
    • C07D487/04A61K31/495C07D207/16
    • C07D487/04
    • Compounds of formula (I) and pharmaceutical compositions containing the compounds of formula (I): ##STR1## are provided. In formula (I): Ar is a substituted or unsubstituted aromatic or heterocyclic group; R is H or a substituted or unsubstituted straight or branched chain, cyclic or mixture of straight branched and cyclic alkyl, alkenyl, or alkynyl group having from 1-20 carbon atom; A is a functional group that bears a polar moiety; R.sub.1 is R, R--C=0, R substituted with one or more heteroatoms, a substituted or unsubstituted aryl group, or is aryl-(CH.sub.2).sub.n ; R.sub.2 is (CH.sub.2).sub.n, CHR, C(R).sub.2, COO, OCO, NHCO, CONH, SO, SO.sub.2 or NR; R.sub.3 and R.sub.4, which are the same or different or each may be absent, and are .dbd.O, H, O-aryl, OR, O-alkyl or alkyl, aryl, SR, S-aryl, NHR, NH-aryl, NR, or are other heteroaromatic groups; R.sub.5 is H, OH or R; E and F, which are the same or are different, are either N or (CH.sub.2).sub.p ; p is an integer or 0 between 0 and 5; m and n are integers or 0 between 0 and 10; T is O, S, NCOR or NR; U and V, which may be the same or different, are (CH.sub.2)n; W is CO, (CH.sub.2)n, (CH.sub.2).sub.n --CHR or CHR--(CH.sub.2).sub.n ; X and Y, which may be the same or different, are H, alkyl or aryl or X and Y form a saturated or unsaturated homocyclic or heterocyclic ring contain 3-15 members; and Z is H, SR, NHR or N(R).sub.2.
    • 式(I)化合物和含有式(I)化合物的药物组合物:取代或未取代的芳族或杂环基团; R是H或具有1-20个碳原子的直链或支链直链或支链,直链或环状的烷基,烯基或炔基的直链或支链的混合物; A是具有极性部分的官能团; R1是R,R-C = 0,被一个或多个杂原子取代的R,取代或未取代的芳基,或是芳基 - (CH 2)n; R2是(CH2)n,CHR,C(R)2,COO,OCO,NHCO,CONH,SO,SO2或NR; R 3和R 4相同或不同或各自不存在,并且为= O,H,O-芳基,OR,O-烷基或烷基,芳基,SR,S-芳基,NHR,NH-芳基,NR ,或其它杂芳族基团; R5是H,OH或R; E和F相同或不同,是N或(CH2)p; p是0或5之间的整数或0; m和n是整数,0是0和10之间; T为O,S,NCOR或NR; U和V可以相同或不同,是(CH 2)n; W是CO,(CH 2)n,(CH 2)n -CHR或CHR-(CH 2)n; X和Y可以相同或不同,是H,烷基或芳基,或X和Y形成含有3-15个成员的饱和或不饱和的杂环或杂环; 并且Z是H,SR,NHR或N(R)2。
    • 8. 发明授权
    • Method of design of compounds that mimic conformational features of
selected peptides
    • 模拟所选肽的构象特征的化合物的设计方法
    • US5331573A
    • 1994-07-19
    • US628111
    • 1990-12-14
    • Vitukudi N. BalajiChandra U. Singh
    • Vitukudi N. BalajiChandra U. Singh
    • C07K16/00G06F17/50G06F19/16G06F15/42
    • C07K16/00G06F19/16
    • A method of rational drug design includes simulating polypeptides in a way that predicts the most probable secondary and/or tertiary structures of a polypeptide, e.g., an oligopeptide, without any presumptions as to the conformation of the underlying primary or secondary structure. The method involves computer simulation of the polypeptide, and more particularly simulating a real-size primary structure in an aqueous environment, shrinking the size of the polypeptide isobarically and isothermally, and expanding the simulated polypeptide to its real size in selected time periods. A useful set of tools, termed Balaji plots, energy conformational maps, and probability maps, assist in identifying those portions of the predicted peptide structure that are most flexible or most rigid. The rational design of novel compounds, useful as drugs, e.g., bioactive peptidomimetic compounds, and constrained analogs thereof, is thus made possible using the simulation methods and tools of the described invention.
    • 合理药物设计的方法包括以预测多肽(例如寡肽)的最可能的次要和/或三级结构的方式来模拟多肽,而没有关于下面的一级或二级结构的构象的任何推定。 该方法涉及多肽的计算机模拟,并且更具体地模拟水性环境中的实际一级结构,以等温和等温收缩多肽的大小,并在选定的时间段内将模拟多肽扩增至其实际大小。 一组有用的工具,称为Balaji图,能量构象图和概率图,有助于确定最灵活或最刚性的预测肽结构的那些部分。 因此,使用所述发明的模拟方法和工具可以合理地设计可用作药物的生物活性肽模拟化合物及其约束类似物的新化合物。