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    • 9. 发明申请
    • THE ANTISENSE TRANSCRIPTOMES OF CELLS
    • 细胞的抗原转录物
    • WO2010065576A2
    • 2010-06-10
    • PCT/US2009066313
    • 2009-12-02
    • UNIV JOHNS HOPKINSVOGELSTEIN BERTKINZLER KENNETH WHE YIPINGVELCULESCU VICTORPAPADOPOULOS NICKOLAS
    • VOGELSTEIN BERTKINZLER KENNETH WHE YIPINGVELCULESCU VICTORPAPADOPOULOS NICKOLAS
    • C12N15/11C12Q1/68G06F19/22
    • C12Q1/6844G06F19/22C12Q2539/113C12Q2523/125C12Q2521/107
    • Transcription in mammalian cells can be assessed at a genome-wide level, but it has been difficult to reliably determine whether individual transcripts are derived from the Plus- or Minus-strands of chromosomes. This distinction can be critical for understanding the relationship between known transcripts (sense) and the complementary antisense transcripts that may regulate them. Here we describe a technique that can be used to (i) identify the DNA strand of origin for any particular RNA transcript and (ii) quantify the number of sense and antisense transcripts from expressed genes at a global level. We examined five different human cell types and in each case found evidence for antisense transcripts in 2900 to 6400 human genes. The distribution of antisense transcripts was distinct from that of sense transcripts, was non-random across the genome, and differed among cell types. Antisense transcripts thus appear to be a pervasive feature of human cells, suggesting that they are a fundamental component of gene regulation.
    • 哺乳动物细胞中的转录可以在全基因组范围内进行评估,但是难以可靠地确定个体转录本是否衍生自染色体的加号或阴影链。 这种区别对于了解已知转录物(有义)和可能调节它们的互补反义转录物之间的关系可能是至关重要的。 在这里,我们描述了一种可用于(i)识别任何特定RNA转录物的DNA链起源的技术,(ii)在全球范围内量化来自表达基因的正义和反义转录本的数量。 我们检查了五种不同的人类细胞类型,并且在每种情况下都发现2900至6400个人类基因中的反义转录物的证据。 反义转录物的分布与有义转录物的分布不同,在基因组中是非随机的,并且在细胞类型之间不同。 因此,反义转录物似乎是人类细胞的普遍特征,表明它们是基因调控的基本组成部分。