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1. 发明申请

WO2018081654A1 BIOINFORMATICS SYSTEMS, APPARATUSES, AND METHODS FOR PERFORMING SECONDARY AND/OR TERTIARY PROCESSING 审中-公开
标题翻译：用于进行二次和/或三次加工的生物信息系统，设备和方法
公开(公告)号：WO2018081654A1
公开(公告)日：2018-05-03
申请号：PCT/US2017/058890
申请日：2017-10-27
申请人： EDICO GENOME, CORP.
发明人： HAHM, Mark, David , DE BEER, Jacobus , JAIN, Varun , MEHIO, Rami , OJARD, Eric , RUEHLE, Michael , PTASHEK, Amnon , CATREUX, Severine , VISVANATH, Arun
IPC分类号： G06F19/28 , G06F19/22 , G06F21/76
摘要： A system, method and apparatus for executing a bioinformatics analysis on genetic sequence data is provided. Particularly, a genomics analysis platform for executing a sequence analysis pipeline is provided. The genomics analysis platform includes one or more of a first integrated circuit, where each first integrated circuit forms a central processing unit (CPU) that is responsive to one or more software algorithms that are configured to instruct the CPU to perform a first set of genomic processing steps of the sequence analysis pipeline. Additionally, a second integrated circuit is also provided, where each second integrated circuit forming a field programmable gate array (FPGA), the FPGA being configured by firmware to arrange a set of hardwired digital logic circuits that are interconnected by a plurality of physical interconnects to perform a second set of genomic processing steps of the sequence analysis pipeline, the set of hardwired digital logic circuits of each FPGA being arranged as a set of processing engines to perform the second set of genomic processing steps. A shared memory is also provided.
摘要翻译：提供了用于对基因序列数据执行生物信息学分析的系统，方法和装置。具体而言，提供了用于执行序列分析流水线的基因组分析平台。基因组学分析平台包括第一集成电路中的一个或多个，其中每个第一集成电路形成响应于一个或多个软件算法的中央处理单元（CPU），该软件算法被配置为指示CPU执行第一组基因组处理序列分析流水线的步骤。此外，还提供了第二集成电路，其中每个第二集成电路形成现场可编程门阵列（FPGA），所述FPGA由固件配置为布置一组硬连线数字逻辑电路，所述一组硬连线数字逻辑电路通过多个物理互连互连到执行序列分析流水线的第二组基因组处理步骤，每个FPGA的该组硬连线数字逻辑电路被布置为一组处理引擎以执行第二组基因组处理步骤。还提供共享内存。

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