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    • 6. 发明申请
    • BIOINFORMATIC PROCESSES FOR DETERMINATION OF PEPTIDE BINDING
    • 用于确定肽结合的生物工艺
    • WO2011119484A1
    • 2011-09-29
    • PCT/US2011/029192
    • 2011-03-21
    • IOGENETICS, LLCBREMEL, Robert, D.HOMAN, Jane
    • BREMEL, Robert, D.HOMAN, Jane
    • G01N33/48C40B50/02
    • G06F19/18G06F19/24
    • Methods of identification of peptide binding to ligands, such as epitopes expressed by microorganisms and by mammalian cells. A method for identification in silico of peptides and sets of peptides internal to or on the surface of microorganisms and cells which have a high probability of being effective in stimulating humoral and cell mediated immune responses. The method combines multiple predictive tools to provide a composite of both topology and multiple sets of binding or affinity characteristics of specific peptides within an entire proteome. With a composite having topological distribution and spatial relationship, the method identifies regions which have a high probability of being B-cell or MHC binding sites comprising T-cell epitopes on the surface of microorganisms or cells, or MHC binding sites comprising T cell epitopes internal to microorganisms or cells. Polypeptides comprising the epitopes, and vaccines, antibodies and diagnostic products are developed using the epitopes.
    • 识别与配体结合的肽的方法,例如由微生物和哺乳动物细胞表达的表位。 用于鉴定微生物和细胞内部或表面上的多肽和肽集合的方法,其具有很有可能有效刺激体液和细胞介导的免疫应答的可能性。 该方法结合了多种预测工具,以提供整个蛋白质组中特定肽的拓扑结构和多组结合或亲和特性的复合物。 具有拓扑分布和空间关系的复合物,该方法识别在微生物或细胞表面上包含T细胞表位的B细胞或MHC结合位点的高概率的区域,或包含内含T细胞表位的MHC结合位点 到微生物或细胞。 使用表位开发了包含表位的多肽和疫苗,抗体和诊断产物。
    • 9. 发明申请
    • IMMUNE RECOGNITION MOTIFS
    • 免疫识别MOTIFS
    • WO2016007870A3
    • 2016-04-07
    • PCT/US2015039969
    • 2015-07-10
    • IOGENETICS LLC
    • BREMEL ROBERT DHOMAN JANEIMBODEN MICHAEL
    • G06F19/18G06F19/24G06N3/08
    • G06F19/22G01N33/6854G01N33/6878G01N2800/24G06F19/18G06F19/28
    • The present invention provides methods and systems for identifying and classifying epitopes and use of that information to analyze proteins and peptides within proteins, especially potential epitopes, and to use the information to design synthetic peptides and proteins, analyze biopharmaceutical proteins, and diagnose autoimmune conditions. Peptides which are bound in MHC grooves comprise two sets of amino acids: those that face inwards into the groove and determine the binding affinity to the MHC molecule (the groove exposed motifs or GEM) and those which do not interact with the groove but rather are on the obverse side exposed outwardly to the T-cells (the T-cell exposed Motifs or TCEM). The present invention utilizes information related to the identity and physiochemical characteristics of the GEM and TCEM.
    • 本发明提供了用于鉴定和分类表位以及使用该信息分析蛋白质中的蛋白质和肽,特别是潜在表位,并使用该信息设计合成肽和蛋白质,分析生物药物蛋白质并诊断自身免疫病症的方法和系统。 结合在MHC凹槽中的肽包含两组氨基酸:面向内凹槽并确定对MHC分子(凹槽暴露的基序或GEM)的结合亲和力的那些氨基酸以及不与凹槽相互作用的那些氨基酸,而是 在正面暴露于T细胞(T细胞暴露的基序或TCEM)。 本发明利用与GEM和TCEM的身份和生理化学特征相关的信息。
    • 10. 发明申请
    • IMMUNE RECOGNITION MOTIFS
    • 免疫识别运动
    • WO2016007870A2
    • 2016-01-14
    • PCT/US2015/039969
    • 2015-07-10
    • IOGENETICS, LLC
    • BREMEL, Robert D.HOMAN, JaneIMBODEN, Michael
    • G06F19/20
    • G06F19/22G01N33/6854G01N33/6878G01N2800/24G06F19/18G06F19/28
    • The present invention provides methods and systems for identifying and classifying epitopes and use of that information to analyze proteins and peptides within proteins, especially potential epitopes, and to use the information to design synthetic peptides and proteins, analyze biopharmaceutical proteins, and diagnose autoimmune conditions. Peptides which are bound in MHC grooves comprise two sets of amino acids: those that face inwards into the groove and determine the binding affinity to the MHC molecule (the groove exposed motifs or GEM) and those which do not interact with the groove but rather are on the obverse side exposed outwardly to the T-cells (the T-cell exposed Motifs or TCEM). The present invention utilizes information related to the identity and physiochemical characteristics of the GEM and TCEM.
    • 本发明提供用于鉴定和分类表位的方法和系统,以及该信息的使用以分析蛋白质,特别是潜在表位内的蛋白质和肽,并使用该信息来设计合成肽和蛋白质,分析生物药物蛋白质并诊断自身免疫病症。 在MHC槽中结合的肽包含两组氨基酸:那些面向内槽并确定与MHC分子(凹槽暴露图案或GEM)的结合亲和力以及不与凹槽相互作用的那些氨基酸 在外侧暴露于T细胞(T细胞暴露的基序或TCEM)的正面上。 本发明利用与GEM和TCEM的身份和物理化学特性相关的信息。