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1. 发明授权

US08126235B2 Methods and apparatus for automated base-calling on multiple DNA strands 有权
标题翻译：在多个DNA链上进行自动基本呼叫的方法和装置
公开(公告)号：US08126235B2
公开(公告)日：2012-02-28
申请号：US12418933
申请日：2009-04-06
申请人： Xiaomeng Shi , Muriel Medard , Ralf Koetter , Nuala Ann Koetter, legal representative , Desmond S. Lun
发明人： Xiaomeng Shi , Muriel Medard , Ralf Koetter , Desmond S. Lun
IPC分类号： G06K9/00
CPC分类号： G06K9/0053 , G01N27/44717 , G01N30/8682 , G01N30/8696
摘要： In some aspects, a method of automated base-calling using at least one image obtained from a chemical sequencing process performed simultaneously on a plurality of DNA strands, the at least one image including intensity information corresponding to locations of at least one base in the plurality of DNA strands is provided. The method comprises processing the at least image to obtain a function corresponding to the intensity information in the at least one image for the at least one base, the function incorporating intensity information corresponding to each of the plurality of DNA strands, identifying a plurality of peaks in the function, the plurality of peaks indicating possible locations for the at least one base in the plurality of DNA strands, assigning membership to each of the plurality of peaks by determining whether each of the plurality of peaks is believed to have resulted from none, one or multiple of the plurality of DNA strands, and computing a sequence for the at least one base for each of the plurality of DNA strands based, at least in part, on the membership assignment.
摘要翻译：在一些方面，一种使用从多个DNA链同时执行的化学测序过程获得的至少一个图像进行自动基本呼叫的方法，所述至少一个图像包括对应于多个基因中至少一个基因位置的强度信息的DNA链。所述方法包括处理所述至少一个图像以获得对应于所述至少一个基底的所述至少一个图像中的强度信息的函数，所述功能包括对应于所述多个DNA链中的每一个的强度信息，识别多个峰在所述功能中，所述多个峰指示所述多个DNA链中所述至少一个碱基的可能位置，通过确定所述多个峰中的每一个是否被认为是由所述多个峰中的每一个赋予的，至少部分地基于成员分配来计算多个DNA链中的一个或多个，以及针对所述多个DNA链中的每一个为所述至少一个碱基计算序列。

2. 发明申请

US20100074492A1 METHODS AND APPARATUS FOR AUTOMATED BASE-CALLING ON MULTIPLE DNA STRANDS 有权
标题翻译：用于自动基因多态DNA检测的方法和装置
公开(公告)号：US20100074492A1
公开(公告)日：2010-03-25
申请号：US12418933
申请日：2009-04-06
申请人： Xiaomeng Shi , Muriel Medard , Ralf Koetter , Nuala Ann Koetter , Desmond S. Lun
发明人： Xiaomeng Shi , Muriel Medard , Ralf Koetter , Nuala Ann Koetter , Desmond S. Lun
IPC分类号： G06K9/00
CPC分类号： G06K9/0053 , G01N27/44717 , G01N30/8682 , G01N30/8696
摘要： In some aspects, a method of automated base-calling using at least one image obtained from a chemical sequencing process performed simultaneously on a plurality of DNA strands, the at least one image including intensity information corresponding to locations of at least one base in the plurality of DNA strands is provided. The method comprises processing the at least image to obtain a function corresponding to the intensity information in the at least one image for the at least one base, the function incorporating intensity information corresponding to each of the plurality of DNA strands, identifying a plurality of peaks in the function, the plurality of peaks indicating possible locations for the at least one base in the plurality of DNA strands, assigning membership to each of the plurality of peaks by determining whether each of the plurality of peaks is believed to have resulted from none, one or multiple of the plurality of DNA strands, and computing a sequence for the at least one base for each of the plurality of DNA strands based, at least in part, on the membership assignment.
摘要翻译：在一些方面，一种使用从多个DNA链同时执行的化学测序过程获得的至少一个图像进行自动基本呼叫的方法，所述至少一个图像包括对应于多个基因中至少一个基因位置的强度信息的DNA链。所述方法包括处理所述至少一个图像以获得对应于所述至少一个基底的所述至少一个图像中的强度信息的函数，所述功能包括对应于所述多个DNA链中的每一个的强度信息，识别多个峰在所述功能中，所述多个峰指示所述多个DNA链中所述至少一个碱基的可能位置，通过确定所述多个峰中的每一个是否被认为是由所述多个峰中的每一个赋予的，至少部分地基于成员分配来计算多个DNA链中的一个或多个，以及针对所述多个DNA链中的每一个为所述至少一个碱基计算序列。

3. 发明授权

US07414978B2 Minimum-cost routing with network coding 有权
标题翻译：具有网络编码的最低成本路由
公开(公告)号：US07414978B2
公开(公告)日：2008-08-19
申请号：US11027889
申请日：2004-12-30
申请人： Desmond S. Lun , Muriel Medard , Tracey Ho , Ralf Koetter , Niranjan Ratnakar
发明人： Desmond S. Lun , Muriel Medard , Tracey Ho , Ralf Koetter , Niranjan Ratnakar
IPC分类号： H04B7/00
CPC分类号： H04L45/12 , H04L45/124
摘要： A method and computer program product for performing minimum cost routing with network coding is presented. The method and system model a network as a directed graph. A cost per unit flow is associated with each link of the directed graph. A link capacity is associated with each link of the directed graph. A network code is then computed that sets up a routing connection that achieves an optimal cost using the cost per unit flow for each link of the directed graph and using the link capacity for each link of the directed graph.
摘要翻译：提出了一种通过网络编码实现最低成本路由的方法和计算机程序产品。该方法和系统将网络建模为有向图。单位流量的成本与有向图的每个链接相关联。链接容量与有向图的每个链接相关联。然后计算网络代码，其建立使用有向图的每个链路的每单位流的成本来实现最优成本的路由连接，并且使用有向图的每个链路的链路容量。

4. 发明申请

US20140269505A1 Wireless Reliability Architecture And Methods Using Network Coding 有权
标题翻译：无线可靠性架构和使用网络编码的方法
公开(公告)号：US20140269505A1
公开(公告)日：2014-09-18
申请号：US14013330
申请日：2013-08-29
申请人： Muriel Medard , Xiaomeng Shi , Marie-Jose Montpetit , Surat Teerapittayanon , Kerim Fouli
发明人： Muriel Medard , Xiaomeng Shi , Marie-Jose Montpetit , Surat Teerapittayanon , Kerim Fouli
IPC分类号： H04W28/04 , H04W40/00
CPC分类号： H04W4/06 , H04L1/0011 , H04L1/0077 , H04W28/04 , H04W40/00
摘要： Network-coding-enabled reliability architectures and techniques are provided that are capable of enhancing data transfer reliability and efficiency in next generation wireless networks. In some embodiments, the techniques and architectures utilize a flexible thread-based coding approach to implement network coding. The techniques and architectures may also, or alternatively, utilize systematic intra-session random linear network coding as a packet erasure code to support reliable data transfer.
摘要翻译：提供了支持网络编码的可靠性架构和技术，能够增强下一代无线网络中的数据传输可靠性和效率。在一些实施例中，技术和架构利用基于线程的灵活编码方法实现网络编码。技术和架构还可以或者可选地利用系统的会话内随机线性网络编码作为分组擦除代码来支持可靠的数据传输。

5. 发明申请

US20120096124A1 RANDOM LINEAR CODING APPROACH TO DISTRIBUTED DATA STORAGE 有权
标题翻译：分布式数据存储的随机线性编码方法
公开(公告)号：US20120096124A1
公开(公告)日：2012-04-19
申请号：US13267764
申请日：2011-10-06
申请人： Muriel Medard , Supratim Deb , Ralf Koetter
发明人： Muriel Medard , Supratim Deb , Ralf Koetter
IPC分类号： G06F15/16
CPC分类号： H04L67/1095 , G06F17/30209 , H04L67/104
摘要： A method and computer program product for providing a random linear coding approach to distributed data storage is presented. A file is broken into a plurality of pieces. For every peer (peer means storage-location with limited storage space), the number of coded-pieces the peer can store is determined. Each of the coded-piece is determined by taking random linear combination of all the pieces of the entire file. The associate code-vector is stored for every coded-piece. The file is retrieved by collecting code-vectors and the coded-pieces from the peers and viewing the collected code-vectors as a matrix. When a dimension of the matrix is equal to the number of pieces of the file, the file is recovered using the collection of code vectors in the matrix.
摘要翻译：提出了一种用于向分布式数据存储提供随机线性编码方法的方法和计算机程序产品。文件被分成多个部分。对于每个对等体（对等体意味着具有有限存储空间的存储位置），确定对等体可以存储的编码的数量。每个编码片段通过采用整个文件的所有片段的随机线性组合来确定。为每个编码块存储关联码矢量。通过收集来自对等体的代码矢量和编码块并以收集的码矢量作为矩阵来检索文件。当矩阵的维数等于文件的数量时，使用矩阵中的代码向量的集合来恢复文件。

6. 发明授权

US08046426B2 Random linear coding approach to distributed data storage 有权
标题翻译：随机线性编码方法分布式数据存储
公开(公告)号：US08046426B2
公开(公告)日：2011-10-25
申请号：US11026550
申请日：2004-12-30
申请人： Muriel Medard , Supratim Deb , Ralf Koetter
发明人： Muriel Medard , Supratim Deb , Ralf Koetter
IPC分类号： G06F15/16
CPC分类号： H04L67/1095 , G06F17/30209 , H04L67/104
摘要： A method and computer program product for providing a random linear coding approach to distributed data storage is presented. A file is broken into a plurality of pieces. For every peer (peer means storage-location with limited storage space), the number of coded-pieces the peer can store is determined. Each of the coded-piece is determined by taking random linear combination of all the pieces of the entire file. The associate code-vector is stored for every coded-piece. The file is retrieved by collecting code-vectors and the coded-pieces from the peers and viewing the collected code-vectors as a matrix. When a dimension of the matrix is equal to the number of pieces of the file, the file is recovered using the collection of code vectors in the matrix.
摘要翻译：提出了一种用于向分布式数据存储提供随机线性编码方法的方法和计算机程序产品。文件被分成多个部分。对于每个对等体（对等体意味着具有有限存储空间的存储位置），确定对等体可以存储的编码的数量。每个编码片段通过采用整个文件的所有片段的随机线性组合来确定。为每个编码块存储关联码矢量。通过收集来自对等体的代码矢量和编码块并以收集的码矢量作为矩阵来检索文件。当矩阵的维数等于文件的数量时，使用矩阵中的代码向量的集合来恢复文件。

7. 发明申请

US20060146716A1 Minimum-cost routing with network coding 有权
标题翻译：具有网络编码的最低成本路由
公开(公告)号：US20060146716A1
公开(公告)日：2006-07-06
申请号：US11027889
申请日：2004-12-30
申请人： Desmond Lun , Muriel Medard , Tracy Ho , Ralf Koetter , Niranjan Ratnakar
发明人： Desmond Lun , Muriel Medard , Tracy Ho , Ralf Koetter , Niranjan Ratnakar
IPC分类号： H04J3/14 , H04L12/28
CPC分类号： H04L45/12 , H04L45/124
摘要： A method and computer program product for performing minimum cost routing with network coding is presented. The method and system model a network as a directed graph. A cost per unit flow is associated with each link of the directed graph. A link capacity is associated with each link of the directed graph. A network code is then computed that sets up a routing connection that achieves an optimal cost using the cost per unit flow for each link of the directed graph and using the link capacity for each link of the directed graph.
摘要翻译：提出了一种通过网络编码实现最低成本路由的方法和计算机程序产品。该方法和系统将网络建模为有向图。单位流量的成本与有向图的每个链接相关联。链接容量与有向图的每个链接相关联。然后计算网络代码，其建立使用有向图的每个链路的每单位流的成本来实现最优成本的路由连接，并且使用有向图的每个链路的链路容量。

8. 发明授权

US09271123B2 Wireless reliability architecture and methods using network coding 有权
公开(公告)号：US09271123B2
公开(公告)日：2016-02-23
申请号：US14013330
申请日：2013-08-29
申请人： Muriel Medard , Xiaomeng Shi , Marie-Jose Montpetit , Surat Teerapittayanon , Kerim Fouli
发明人： Muriel Medard , Xiaomeng Shi , Marie-Jose Montpetit , Surat Teerapittayanon , Kerim Fouli
IPC分类号： H04W72/00 , H04L12/18 , H04W4/06 , H04L1/00 , H04W28/04 , H04W40/00
CPC分类号： H04W4/06 , H04L1/0011 , H04L1/0077 , H04W28/04 , H04W40/00
摘要： Network-coding-enabled reliability architectures and techniques are provided that are capable of enhancing data transfer reliability and efficiency in next generation wireless networks. In some embodiments, the techniques and architectures utilize a flexible thread-based coding approach to implement network coding. The techniques and architectures may also, or alternatively, utilize systematic intra-session random linear network coding as a packet erasure code to support reliable data transfer.

9. 发明授权

US08473998B1 Network coding for multi-resolution multicast 有权
公开(公告)号：US08473998B1
公开(公告)日：2013-06-25
申请号：US12846292
申请日：2010-07-29
申请人： Daniel E. Lucani , Minji Kim , Fang Zhao , Xiaomeng Shi , Muriel Medard , Marie-Jose Montpetit
发明人： Daniel E. Lucani , Minji Kim , Fang Zhao , Xiaomeng Shi , Muriel Medard , Marie-Jose Montpetit
IPC分类号： H04N7/12 , H04N7/16 , H04N7/173 , H04N11/02 , H04N11/04
CPC分类号： H04N21/440227 , H04L12/1859 , H04N21/234327 , H04N21/234363 , H04N21/437 , H04N21/6371 , H04N21/6405
摘要： A method, apparatus and computer program product for utilizing network coding for multi-resolution multicast is presented. A network source partitions source content into a base layer and one or more refinement layers. The network source receives a respective one or more push-back messages from one or more network destination receivers, the push-back messages identifying the one or more refinement layers suited for each one of the one or more network destination receivers. The network source computes a network code involving the base layer and the one or more refinement layers for at least one of the one or more network destination receivers, and transmits the network code to the one or more network destination receivers in accordance with the push-back messages.

10. 发明申请

US20140269503A1 Wireless Reliability Architecture And Methods Using Network Coding 有权
公开(公告)号：US20140269503A1
公开(公告)日：2014-09-18
申请号：US13968566
申请日：2013-08-16
申请人： Muriel Medard , Xiaomeng Shi , Marie-Jose Montpetit , Surat Teerapittayanon , Kerim Fouli
发明人： Muriel Medard , Xiaomeng Shi , Marie-Jose Montpetit , Surat Teerapittayanon , Kerim Fouli
IPC分类号： H04L1/00
CPC分类号： H04W4/06 , H04L1/0011 , H04L1/0077 , H04W28/04 , H04W40/00
摘要： Network-coding-enabled reliability architectures and techniques are provided that are capable of enhancing data transfer reliability and efficiency in next generation wireless networks. In some embodiments, the techniques and architectures utilize a flexible thread-based coding approach to implement network coding. The techniques and architectures may also, or alternatively, utilize systematic intra-session random linear network coding as a packet erasure code to support reliable data transfer.

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