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    • 1. 发明授权
    • Fixed address analysis of sequence tags
    • 序列标签的固定地址分析
    • US06677121B2
    • 2004-01-13
    • US09855793
    • 2001-05-15
    • Paul M. LizardiMatthew E. RothLi FengCesar E. GuerraShane C. WeberJoseph C. KaufmanDarin R. Latimer
    • Paul M. LizardiMatthew E. RothLi FengCesar E. GuerraShane C. WeberJoseph C. KaufmanDarin R. Latimer
    • C12Q168
    • C12Q1/6855C12Q1/6809C12Q1/6837Y10S977/924C12Q2525/191C12Q2525/179C12Q2521/313C12Q2565/513
    • Disclosed is a method for the comprehensive analysis of nucleic acid samples and a detector composition for use in the method. The method, referred to as Fixed Address Analysis of Sequence Tags (FAAST), involves generation of a set of nucleic acid fragments having a variety of sticky end sequences; indexing of the fragments into sets based on the sequence of sticky ends; associating a detector sequence with the fragments; sequence-based capture of the indexed fragments on a detector array; and detection of the fragment labels. Generation of the multiple sticky end sequences is accomplished by incubating the nucleic acid sample with one or more nucleic acid cleaving reagents. The indexed fragments are captured by hybridization and coupling, preferably by ligation, to a probe. The method allows a complex sample of nucleic acid to be quickly and easily cataloged in a reproducible and sequence-specific manner. One form of the method allows determination of associations, in a nucleic acid molecule, of different combinations of known or potential sequences. Another form of the method assesses modification of sequences in nucleic acid molecules by basing cleavage of the molecules on the presence or absence of modification.
    • 公开了用于综合分析核酸样品的方法和用于该方法的检测器组合物。 称为序​​列标签的固定地址分析(FAAST)的方法涉及产生具有各种粘性末端序列的一组核酸片段; 基于粘性末端的顺序将片段索引到集合中; 将检测器序列与片段相关联; 检测器阵列上索引片段的基于序列的捕获; 并检测片段标签。 通过将核酸样品与一种或多种核酸切割试剂孵育来实现多粘性末端序列的产生。 索引的片段通过杂交和偶联,优选通过连接被捕获到探针。 该方法允许复制的核酸样品以可再现和序列特异性方式快速且容易地编目。 该方法的一种形式允许确定核酸分子中已知或潜在序列的不同组合的缔合。 该方法的另一种形式通过在存在或不存在修饰的基础上分解裂解来评估核酸分子中序列的修饰。
    • 2. 发明授权
    • Fixed address analysis of sequence tags
    • 序列标签的固定地址分析
    • US06261782B1
    • 2001-07-17
    • US09544713
    • 2000-04-06
    • Paul M. LizardiMatthew E. RothLi FengCesar E. GuerraShane C. WeberJoseph C. KaufmanDarin R. Latimer
    • Paul M. LizardiMatthew E. RothLi FengCesar E. GuerraShane C. WeberJoseph C. KaufmanDarin R. Latimer
    • C12Q168
    • C12Q1/6855C12Q1/6809C12Q1/6837Y10S977/924C12Q2525/191C12Q2525/179C12Q2521/313C12Q2565/513
    • Disclosed is a method for the comprehensive analysis of nucleic acid samples and a detector composition for use in the method. The method, referred to as Fixed Address Analysis of Sequence Tags (FAAST), involves generation of a set of nucleic acid fragments having a variety of sticky end sequences; indexing of the fragments into sets based on the sequence of sticky ends; associating a detector sequence with the fragments; sequence-based capture of the indexed fragments on a detector array; and detection of the fragment labels. Generation of the multiple sticky end sequences is accomplished by incubating the nucleic acid sample with one or more nucleic acid cleaving reagents. The indexed fragments are captured by hybridization and coupling, preferably by ligation, to a probe. The method allows a complex sample of nucleic acid to be quickly and easily cataloged in a reproducible and sequence-specific manner. One form of the method allows determination of associations, in a nucleic acid molecule, of different combinations of known or potential sequences. Another form of the method assesses modification of sequences in nucleic acid molecules by basing cleavage of the molecules on the presence or absence of modification.
    • 公开了用于综合分析核酸样品的方法和用于该方法的检测器组合物。 称为序​​列标签的固定地址分析(FAAST)的方法涉及产生具有各种粘性末端序列的一组核酸片段; 基于粘性末端的序列将片段索引到集合中; 将检测器序列与片段相关联; 检测器阵列上索引片段的基于序列的捕获; 并检测片段标签。 通过将核酸样品与一种或多种核酸切割试剂孵育来实现多粘性末端序列的产生。 索引的片段通过杂交和偶联,优选通过连接被捕获到探针。 该方法允许复制的核酸样品以可再现和序列特异性方式快速且容易地编目。 该方法的一种形式允许确定核酸分子中已知或潜在序列的不同组合的缔合。 该方法的另一种形式通过在存在或不存在修饰的基础上分解裂解来评估核酸分子中序列的修饰。