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    • 1. 发明申请
    • METHOD OF DETERMINATION OF PROTEIN LIGAND BINDING AND OF THE MOST PROBABLE LIGAND POSE IN PROTEIN BINDING SITE
    • 蛋白质配体结合蛋白质结合位点和最可疑的配体位置的确定方法
    • US20100112724A1
    • 2010-05-06
    • US12594845
    • 2007-04-12
    • Dmitry Gennadievich TovbinDmitry Nikolaevich Tarasov
    • Dmitry Gennadievich TovbinDmitry Nikolaevich Tarasov
    • G01N33/566
    • G16C20/50G16B15/00
    • The present invention proposes a method of structural design, search and selection of potential medicinal compounds—ligands, comprising prognostication of the value of the protein ligand binding in terms of the score calculated with the help of the scoring function developed for scoring, and prognostication of the most probable ligand pose in the protein binding site in terms of the score calculated with the help of the scoring function developed for docking (the docking function). It is proposed to use two absolutely different scoring functions for docking and scoring. A special procedure is proposed for the development of docking function. Use of two absolutely different functions in the process of docking and scoring principally distinguishes the proposed method of predicting the binding affinity of ligand-protein interaction from all the known methods and makes it possible to substantially improve the quality of said prediction.
    • 本发明提出了一种结构设计,潜在的药物配体的搜索和选择方法,其中包括根据用于评分开发的评分功能计算得出的蛋白质配体结合值的预测,以及预测 根据用于对接开发的评分功能(对接功能)计算得出的蛋白质结合位点中最可能的配体姿势。 建议使用两个完全不同的评分功能进行对接和打分。 提出了开发对接功能的特殊程序。 在对接和评分过程中使用两个完全不同的功能主要区分了所提出的预测配体 - 蛋白质相互作用的结合亲和力与所有已知方法的方法,并且使得可以显着提高所述预测的质量。