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    • 7. 发明公开
    • PROCÉDÉ D'ESTIMATION DE L'AFFINITÉ SONDE-CIBLE D'UNE PUCE A ADN ET PROCÉDÉ DE FABRICATION D'UNE PUCE A ADN
    • PROCÉDÉD'ESTIMATION DE L'AFFINITÉSONDE-CIBLE D'UNE PUCE A ADN ETPROCÉDÉDE FABRICATION D'UNE PUCE A ADN
    • EP3227813A1
    • 2017-10-11
    • EP15808766.8
    • 2015-11-30
    • BiomerieuxHospices Civils De Lyon
    • BECKER, JérémyPEROT, PhilippeMALLET, François
    • G06F19/20
    • The invention relates to a method for estimating the affinity
      ϕ of a first DNA strand, or "probe", for hybridizing to a second DNA strand, or "target", to form a hybrid having a length L
      bp , wherein the method comprises: in each division of a set of
      M divisions of the hybrid, counting of the number of times that each hybrid in a set of
      P DNA strand hybrids is present in said division, wherein said hybrids have a length
      k shorter which is than length L
      bp , or "
      k -hybrids"; for each combination of mismatches of a set of L mismatch combinations in a hybrid having length L
      bp , determining whether said pair of mismatches is present in said hybrid; and calculating the affinity
      ϕ according to the relation: (see formula (I)) in which: - ∀(
      m ,
      p ) ∈ [1,
      Μ ] x [1,
      P ],
      β
      p,m is a predetermined scalar quantifying the contribution to the affinity
      ϕ of the p
      th
      k -hybrid of the set of
      P k -hybrids when this p
      th k-hybrid is present in the n
      th area of said division, and x
      m,p is the number of times that this p
      th
      k -hybrid is counted for said hybrid in the m
      th area of said division; and α is a real term.
    • 本发明涉及用于估计第一DNA链或“探针”与第二DNA链或“靶”杂交以形成具有长度L bp的杂合体的亲和力的方法,其中所述方法包括: 在所述杂种的一组M个划分的每个划分中,计数一组P个DNA链杂交体中的每个杂种存在于所述划分中的次数,其中所述杂种具有比长度L bp短的长度k ,或“k-杂种”; 对于具有长度L bp的杂合体中的一组L错配组合的每个错配组合,确定所述错配对是否存在于所述杂合体中; 并且根据以下关系式计算亲和度:其中:其中:∀(m,p)∈[1,M] x [1,P],βp,m是一个预先确定的标量, 当该第p个k-杂种存在于所述除法的第n个区域中时,对该组k个杂种的第p个k-杂种的亲和力的贡献,以及xm,p是该p 对所述分区的第m个区域中的所述混合动力车计数第k个混合动力车; α是一个实际的术语。