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1. 发明申请

WO2006096324A3 METHOD AND APPARATUS FOR PERFORMING BIOSEQUENCE SIMILARITY SEARCHING 审中-公开
标题翻译：用于执行生物质量相似性搜索的方法和装置
公开(公告)号：WO2006096324A3
公开(公告)日：2007-04-05
申请号：PCT/US2006006105
申请日：2006-02-22
申请人： UNIV WASHINGTON , BUHLER JEREMY DANIEL , CHAMBERLAIN ROGER DEAN , FRANKLIN MARK ALLEN , GYANG KWAME , JACOB ARPITH CHACKO , KRISHNAMURTHY PRAVEEN , LANCASTER JOSEPH MARION
发明人： BUHLER JEREMY DANIEL , CHAMBERLAIN ROGER DEAN , FRANKLIN MARK ALLEN , GYANG KWAME , JACOB ARPITH CHACKO , KRISHNAMURTHY PRAVEEN , LANCASTER JOSEPH MARION
IPC分类号： G06F17/30 , G06F19/22 , G06F19/28
CPC分类号： G06F19/28 , G06F17/3033 , G06F19/22
摘要： A system and method for performing biological sequence similarity searching is disclosed. This includes a programmable logic device configured to include a pipeline that comprises a matching stage, the matching stage being configured to receive a data stream comprising a plurality of possible matches between a plurality of biological sequence data strings and a plurality of substrings of a query string. The pipeline may further include a ungapped extension prefilter stage located downstream from the matching stage, the prefilter stage being configured to shift through pattern matches between the biological sequence data strings and the plurality of substrings of a query string and provide a score so that only pattern matches that exceed a user defined score will pass downstream from the prefilter stage. The matching stage may include at least one Bloom filter.
摘要翻译：公开了一种用于进行生物序列相似性搜索的系统和方法。这包括被配置为包括包括匹配级的流水线的可编程逻辑设备，所述匹配级被配置为接收包括多个生物序列数据串与查询字符串的多个子串之间的多个可能匹配的数据流。流水线还可以包括位于匹配级的下游的无间隙扩展预滤器级，预滤器级被配置为通过生物序列数据串与查询串的多个子串之间的模式匹配移位，并提供分数，使得只有模式超过用户定义分数的匹配将从预过滤器阶段下游传递。匹配阶段可以包括至少一个布隆过滤器。

2. 发明申请

WO03100662A2 ASSOCIATIVE DATABASE SCANNING AND INFORMATION RETRIEVAL USING FPGA DEVICES 审中-公开
标题翻译：使用FPGA器件的相关数据库扫描和信息检索
公开(公告)号：WO03100662A2
公开(公告)日：2003-12-04
申请号：PCT/US0315638
申请日：2003-05-15
申请人： UNIV WASHINGTON , INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN , CHAMBERLAIN ROGER D
发明人： INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN , CHAMBERLAIN ROGER D
IPC分类号： G06F3/06 , G06F11/00 , G06F17/30 , G06Q40/00
CPC分类号： G06F17/30477 , G06Q40/00 , G06Q40/06 , Y10S707/99931 , Y10S707/99933 , Y10S707/99936
摘要： A data storage and retrieval device and method is disclosed. The device includes at least one magnetic storage medium configured to store target data and at least one re-configurable logic device comprising an FPGA coupled to the at least one magnetic storage medium and configured to read a continuous stream of target data therefrom, having been configured with a template or as otherwise desired to fit the type of search and data being searched. The re-configurable logic device is configured to receive at least one search inquiry in the form of a data key and to determine a match between the data key and the target data as it is being read from the at least one magnetic storage medium. This device and method can perform a variety of searches on the target data including without limitation exact and approximate match searches, sequence match searches, image match searches and data reduction searches. This device and method may be provided as part of a stand-alone computer system, embodied in a network attached storage device, or can otherwise be provided as part of a computer LAN or WAN.
摘要翻译：公开了一种数据存储和检索装置和方法。该设备包括配置成存储目标数据的至少一个磁存储介质和至少一个可配置逻辑器件，该逻辑器件包括与该至少一个磁存储介质耦合的FPGA，并被配置为从其中读取连续的目标数据流，具有模板或按照其他方式希望适合正在搜索的搜索和数据的类型。可重新配置的逻辑设备被配置为以数据密钥的形式接收至少一个搜索查询，并且在从所述至少一个磁存储介质读取数据密钥和目标数据之间确定匹配。该设备和方法可以对目标数据执行各种搜索，包括但不限于精确和近似匹配搜索，序列匹配搜索，图像匹配搜索和数据缩减搜索。该设备和方法可以被提供为独立计算机系统的一部分，体现在网络连接的存储设备中，或者可以作为计算机LAN或WAN的一部分提供。

3. 发明申请

WO2005048134A3 INTELLIGENT DATA STORAGE AND PROCESSING USING FPGA DEVICES 审中-公开
标题翻译：智能数据存储和使用FPGA器件进行处理
公开(公告)号：WO2005048134A3
公开(公告)日：2005-08-04
申请号：PCT/US2004016398
申请日：2004-05-21
申请人： UNIV WASHINGTON , CHAMBERLAIN ROGER D , FRANKLIN MARK ALLEN , INDECK RONALD S , CYTRON RON K , CHOLLETI SHARATH R
发明人： CHAMBERLAIN ROGER D , FRANKLIN MARK ALLEN , INDECK RONALD S , CYTRON RON K , CHOLLETI SHARATH R
IPC分类号： G06F1/00 , G06F3/06 , G06F15/78 , G06F17/30 , G06F21/00
CPC分类号： G06F9/44505 , G06F3/0601 , G06F3/061 , G06F3/0655 , G06F3/067 , G06F3/0683 , G06F9/4881 , G06F17/00 , G06F17/30477 , G06F21/602 , G06F21/72 , G06F21/76 , G06F21/85 , G06F2003/0692 , G06Q40/06
摘要： A data storage and retrieval device and method is disclosed. The device includes at least one magnetic storage medium configured to store target data and at least one re-configurable logic device comprising an FPGA coupled to the at least one magnetic storage medium and configured to read a continuous stream of target data therefrom, having been configured with a template or as otherwise desired to fit the type of search and data being searched. The re-configurable logic device is configured to receive at least one search inquiry in the form of a data key and to determine a match between the data key and the target data as it is being read from the at least one magnetic storage medium. This device and method can perform a variety of searches on the target data including without limitation exact and approximate match searches, sequence match searches, image match searches and data reduction searches. This device and method may be provided as part of a stand-alone computer system, embodied in a network attached storage device, or can otherwise be provided as part of a computer LAN or WAN. In addition to performing search and data reduction operations, this device may also be used to perform a variety of other processing operations including encryption, decryption, compression, decompression, and combinations thereof.
摘要翻译：公开了一种数据存储和检索设备和方法。该设备包括被配置为存储目标数据的至少一个磁存储介质以及至少一个可重配置逻辑设备，该至少一个可重配置逻辑设备包括耦合到该至少一个磁存储介质并被配置为从其读取目标数据的连续流的FPGA，与模板或其他需要适合正在搜索的搜索类型和数据。可重新配置的逻辑设备被配置为接收数据密钥形式的至少一个搜索查询并且当数据密钥与目标数据正被从至少一个磁存储介质读取时匹配。该设备和方法可以对目标数据执行各种搜索，包括但不限于精确和近似匹配搜索，序列匹配搜索，图像匹配搜索和数据缩减搜索。该设备和方法可以作为独立计算机系统的一部分提供，体现在网络附加存储设备中，或者可以作为计算机LAN或WAN的一部分提供。除了执行搜索和数据缩减操作之外，该设备还可以用于执行各种其他处理操作，包括加密，解密，压缩，解压缩及其组合。

4. 发明申请

WO0180082A3 ASSOCIATIVE DATABASE SCANNING AND INFORMATION RETRIEVAL 审中-公开
标题翻译：相关数据库扫描和信息检索
公开(公告)号：WO0180082A3
公开(公告)日：2003-09-18
申请号：PCT/US0111255
申请日：2001-04-06
申请人： UNIV WASHINGTON , INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN
发明人： INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN
IPC分类号： G06F3/06 , G06F17/30
CPC分类号： G06F17/30864 , G06F17/30017 , G06F17/30026 , G06F17/30047 , G06F17/30386 , G06F17/30492 , G06F17/30982 , G06F17/30985 , Y10S707/99931 , Y10S707/99933 , Y10S707/99936
摘要： A method and device are disclosed for an associative and approximate, analog or digital scanning of databases that allows for the asynchronous accessing of data from a mass storage medium. The invention includes circuitry and decision logic at the mass storage medium level for determining a key identifying the data of interest, continuously comparing the key to a signal generated from a reading of the data from the mass storage medium with an approximate or exact matching circuit to determine a pattern match, determining a correlation value between the key and the data as it is read in a continuous fashion, and determining a match based upon a preselected threshold value for the correlation value. The key and data may be either analog or digital.
摘要翻译：公开了用于数据库的关联和近似，模拟或数字扫描的方法和装置，其允许来自大容量存储介质的数据的异步访问。本发明包括在大容量存储介质级别的电路和决策逻辑，用于确定识别感兴趣的数据的密钥，连续地将密钥与从大容量存储介质的数据的读取产生的信号与大致或精确的匹配电路相比较确定模式匹配，当以连续方式读取时确定密钥和数据之间的相关值，以及基于相关值的预选阈值来确定匹配。密钥和数据可以是模拟或数字。

5. 发明申请

WO0180082A8 ASSOCIATIVE DATABASE SCANNING AND INFORMATION RETRIEVAL 审中-公开
标题翻译：相关数据库扫描和信息检索
公开(公告)号：WO0180082A8
公开(公告)日：2002-01-03
申请号：PCT/US0111255
申请日：2001-04-06
申请人： UNIV WASHINGTON , INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN
发明人： INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN
IPC分类号： G06F3/06 , G06F17/30
CPC分类号： G06F17/30864 , G06F17/30017 , G06F17/30026 , G06F17/30047 , G06F17/30386 , G06F17/30492 , G06F17/30982 , G06F17/30985 , Y10S707/99931 , Y10S707/99933 , Y10S707/99936
摘要： A method and device are disclosed for an associative and approximate, analog or digital scanning of databases that allows for the asynchronous accessing of data from a mass storage medium. The invention includes circuitry and decision logic at the mass storage medium level for determining a key identifying the data of interest, continuously comparing the key to a signal generated from a reading of the data from the mass storage medium with an approximate or exact matching circuit to determine a pattern match, determining a correlation value between the key and the data as it is read in a continuous fashion, and determining a match based upon a preselected threshold value for the correlation value. The key and data may be either analog or digital.
摘要翻译：公开了用于数据库的关联和近似，模拟或数字扫描的方法和装置，其允许来自大容量存储介质的数据的异步访问。本发明包括在大容量存储介质级别的电路和决策逻辑，用于确定识别感兴趣的数据的密钥，连续地将密钥与从大容量存储介质的数据的读取产生的信号与大致或精确的匹配电路相比较确定模式匹配，当以连续方式读取时确定密钥和数据之间的相关值，以及基于相关值的预选阈值来确定匹配。密钥和数据可以是模拟或数字。

6. 发明专利

CA2523548A1 INTELLIGENT DATA STORAGE AND PROCESSING USING FPGA DEVICES 未知
公开(公告)号：CA2523548A1
公开(公告)日：2005-05-26
申请号：CA2523548
申请日：2004-05-21
申请人： UNIV WASHINGTON
发明人： FRANKLIN MARK ALLEN , CYTRON RON K , INDECK RONALD S , CHOLLETI SHARATH R , CHAMBERLAIN ROGER D
IPC分类号： G06F1/00 , G06F3/06 , G06F15/78 , G06F17/30 , G06F21/00
摘要： A data storage and retrieval device and method is disclosed. The device includes at least one magnetic storage medium configured to store target dat a and at least one re-configurable logic device comprising an FPGA coupled to the at least one magnetic storage medium and configured to read a continuous stream of target data therefrom, having been configured with a template or a s otherwise desired to fit the type of search and data being searched. The re- configurable logic device is configured to receive at least one search inqui ry in the form of a data key and to determine a match between the data key and the target data as it is being read from the at least one magnetic storage medium. This device and method can perform a variety of searches on the targ et data including without limitation exact and approximate match searches, sequence match searches, image match searches and data reduction searches. This device and method may be provided as part of a stand-alone computer system, embodied in a network attached storage device, or can otherwise be provided as part of a computer LAN or WAN. In addition to performing search and data reduction operations, this device may also be used to perform a variety of other processing operations including encryption, decryption, compression, decompression,and combinations thereof.

7. 发明专利

AU5698601A Associative database scanning and information retrieval 未知
公开(公告)号：AU5698601A
公开(公告)日：2001-10-30
申请号：AU5698601
申请日：2001-04-06
申请人： UNIV WASHINGTON
发明人： INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN
IPC分类号： G06F3/06 , G06F17/30

8. 发明专利

CA2755373C ASSOCIATIVE DATABASE SCANNING AND INFORMATION RETRIEVAL 未知
公开(公告)号：CA2755373C
公开(公告)日：2014-09-09
申请号：CA2755373
申请日：2001-04-06
申请人： UNIV WASHINGTON
发明人： INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN
IPC分类号： G06F3/06 , G06F17/30
摘要： A method and device are disclosed for an associative and approximate, analog or digital scanning of databases that allows for the asynchronous accessing of data from a mass storage medium. The invention includes circuitry and decision logic at the mass storage medium level for determining a key identifying the data of interest, continuously comparing the key to a signal generated from a reading of the data from the mass storage medium with an approximate or exact matching circuit to determine a pattern match, determining a correlation value between the key and the data as it is read in a continuous fashion, and determining a match based upon a preselected threshold value for the correlation value. The key and data may be either analog or digital.

9. 发明专利

CA2486359C ASSOCIATIVE DATABASE SCANNING AND INFORMATION RETRIEVAL USING FPGA DEVICES 未知
公开(公告)号：CA2486359C
公开(公告)日：2012-11-20
申请号：CA2486359
申请日：2003-05-15
申请人： UNIV WASHINGTON
发明人： INDECK RONALD S , CYTRON RON KAPLAN , FRANKLIN MARK ALLEN , CHAMBERLAIN ROGER D
IPC分类号： G06F3/06 , G06F17/30 , G06F11/00 , G06F17/15 , G06Q40/00 , G06T1/20
摘要： A data storage and retrieval device and method is disclosed. The device includes at least one magnetic storage medium configured to store target data and at least one re-configurable logic device comprising an FPGA coupled to the at least one magnetic storage medium and configured to read a continuous stream of target data therefrom, having been configured with a template or as otherwise desired to fit the type of search and data being searched. The re-configurable logic device is configured to receive at least one search inquiry in the form of a data key and to determine a match between the data key and the target data as it is being read from the at least one magnetic storage medium. This device and method can perform a variety of searches on the target data including without limitation exact and approximate match searches, sequence match searches, image match searches and data reduction searches. This device and method may be provided as part of a stand-alone computer system, embodied in a network attached storage device, or can otherwise be provided as part of a computer LAN or WAN.

10. 发明专利

AU2009200148A1 Method and apparatus for processing financial information at hardware speeds using FPGA devices 未知
公开(公告)号：AU2009200148A1
公开(公告)日：2009-02-19
申请号：AU2009200148
申请日：2009-01-14
申请人： UNIV WASHINGTON
发明人： INDECK RONALD S , FRANKLIN MARK ALLEN , CYTRON RONALD KAPLAN , CHAMBERLAIN ROGER D
IPC分类号： G06F3/06 , G06F11/00 , G06F17/30 , G06Q40/00
摘要： A method and apparatus use hardware logic deployed on a reconfigurable logic device to process a stream of financial information at hardware speeds. The hardware logic can be configured to perform data reduction operations on the financial information stream. Examples of such data reductions operations include data processing operations to compute a latest stock price, a minimum stock price, and a maximum stock price.

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