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    • 25. 发明授权
    • Systems and methods that utilize machine learning algorithms to facilitate assembly of aids vaccine cocktails
    • 利用机器学习算法方便装配疫苗鸡尾酒的系统和方法
    • US08478535B2
    • 2013-07-02
    • US11324506
    • 2005-12-30
    • Nebojsa JojicVladimir JojicDavid E. HeckermanBrendan John FreyChristopher A. Meek
    • Nebojsa JojicVladimir JojicDavid E. HeckermanBrendan John FreyChristopher A. Meek
    • G01N33/50
    • G06F19/22G06F19/14G06F19/18G06F19/24G06G7/48G06G7/58
    • The subject invention provides systems and methods that facilitate AIDS vaccine cocktail assembly via machine learning algorithms such as a cost function, a greedy algorithm, an expectation-maximization (EM) algorithm, etc. Such assembly can be utilized to generate vaccine cocktails for species of pathogens that evolve quickly under immune pressure of the host. For example, the systems and methods of the subject invention can be utilized to facilitate design of T cell vaccines for pathogens such HIV. In addition, the systems and methods of the subject invention can be utilized in connection with other applications, such as, for example, sequence alignment, motif discovery, classification, and recombination hot spot detection. The novel techniques described herein can provide for improvements over traditional approaches to designing vaccines by constructing vaccine cocktails with higher epitope coverage, for example, in comparison with cocktails of consensi, tree nodes and random strains from data.
    • 本发明提供了通过诸如成本函数,贪心算法,期望最大化(EM)算法等机器学习算法来促进艾滋病疫苗鸡尾酒组合的系统和方法。可以利用这种装配来产生疫苗鸡尾酒, 在宿主免疫压力下快速发展的病原体。 例如,本发明的系统和方法可以用于促进用于诸如HIV的病原体的T细胞疫苗的设计。 此外,本发明的系统和方法可以与其他应用相结合使用,例如序列比对,基序发现,分类和重组热点检测。 本文所述的新颖技术可以提供改进,以通过构建具有较高表位覆盖度的疫苗混合物来设计疫苗的传统方法,例如与来自数据的共同体,树节点和随机菌株的鸡尾酒相比。
    • 28. 发明授权
    • Visualization of high-dimensional data
    • 高维数据的可视化
    • US06519599B1
    • 2003-02-11
    • US09517138
    • 2000-03-02
    • D. Maxwell ChickeringDavid E. HeckermanChristopher A. MeekRobert L. RounthwaiteAmir NetzThierry D'Hers
    • D. Maxwell ChickeringDavid E. HeckermanChristopher A. MeekRobert L. RounthwaiteAmir NetzThierry D'Hers
    • G06F1730
    • G06F17/30994Y10S707/99945
    • Visualization of high-dimensional data sets is disclosed, particularly the display of a network model for a data set. The network, such as a dependency or a Bayesian network, has a number of nodes having dependencies thereamong. The network can be displayed items and connections, corresponding to nodes and dependencies, respectively. Selection of a particular item in one embodiment results in the display of the local distribution associated with the node for the item. In one embodiment, only a predetermined number of the items are shown, such as only the items representing the most popular nodes. Furthermore, in one embodiment, in response to receiving a user input, a sub-set of the connections is displayed, proportional to the user input. In another embodiment, a particular item is displayed in an emphasized manner, and the particular connections representing dependencies including the node represented by the particular item, as well as the items representing nodes also in these dependencies, are also displayed in the emphasized manner. Furthermore, in one embodiment, only an indicated sub-set of the items is displayed.
    • 公开了高维数据集的可视化,特别是显示数据集的网络模型。 诸如依赖关系或贝叶斯网络的网络具有多个具有依赖关系的节点。 网络可以分别显示对应于节点和依赖关系的项目和连接。 在一个实施例中,特定项目的选择导致与项目的节点相关联的本地分布的显示。 在一个实施例中,仅显示预定数量的项目,诸如仅表示最受欢迎节点的项目。 此外,在一个实施例中,响应于接收到用户输入,显示与用户输入成比例的连接的子集。 在另一个实施例中,以强调方式显示特定项目,并且还以强调的方式显示表示依赖性的特定连接,包括由特定项目表示的节点以及表示节点的项目也在这些依赖关系中。 此外,在一个实施例中,仅显示所指示的项目子集。
    • 29. 发明授权
    • Diary-free calorimeter
    • 无日记热量计
    • US08182424B2
    • 2012-05-22
    • US12051431
    • 2008-03-19
    • David E. Heckerman
    • David E. Heckerman
    • A61B5/00
    • A61B5/0002A61B5/02055A61B5/02438A61B5/0531A61B5/11A61B5/1112A61B5/222A61B5/4866A61B5/681A61B5/7267A61B2503/10G06F19/00G06F19/3475G06F19/3481G16H40/63G16H50/50
    • An indirect calorimeter estimates nutritional caloric intake by periodically monitoring weight and sensing physical exercise (i.e., physiological data and/or motion data related to physical exertion), which can then be used in a calorimetry model derived from regression analysis of a population (e.g., linear regression, feed-forward neural network, Gaussian process, boosted regression tree, etc.). A strap-on user device for tracking exercise can detect one or more of heart rate, body temperature, skin resistance, motion/acceleration sensing (e.g., pedometer, accelerometer), velocity sensing (e.g., global positioning system (GPS)), and an intelligent, integrated exercise machine (e.g., treadmill, exercise bike, etc.). To gain further fidelity, the user can fine-tune the estimate by undergoing a journal-based routine for a relatively short period of time or clinical calorimetry measurement (e.g., respiratory calorimeter), thereby providing a baseline for resting or exercising metabolic rate.
    • 间接热量计通过定期监测体重和感测身体运动(即与身体运动相关的生理数据和/或运动数据)来估计营养热量摄入量,然后可用于从人口回归分析得出的量热法模型(例如, 线性回归,前馈神经网络,高斯过程,提升回归树等)。 用于跟踪运动的绑带用户设备可以检测心率,体温,皮肤电阻,运动/加速度感测(例如,计步器,加速度计),速度感测(例如,全球定位系统(GPS))中的一个或多个,以及 一个智能的综合运动器材(如跑步机,运动自行车等)。 为了获得进一步的保真度,用户可以通过在相对短的时间段内进行基于日志的例程或临床量热测量(例如,呼吸量热计)来微调估计,由此提供用于休息或行使代谢率的基线。