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    • 14. 发明授权
    • Clone-array pooled shotgun strategy for nucleic acid sequencing
    • 用于核酸测序的克隆阵列合并霰弹枪策略
    • US06975943B2
    • 2005-12-13
    • US09969111
    • 2001-09-24
    • Richard GibbsAllan BradleyWei-Wen Cai
    • Richard GibbsAllan BradleyWei-Wen Cai
    • C12N15/10C12Q1/68G06F19/00G01N33/48
    • C12N15/1034C12Q1/6874
    • A simplified strategy for sequencing large genomes has been developed. Clone-Array Pooled Shotgun Sequencing (CAPSS) is based upon pooling rows and columns of arrayed genomic clones, for shotgun library construction. Random sequences are accumulated and the data are assembled by sequential comparison of rows and columns, to resolve the sequence of clones at points of intersection. Compared to either a clone-by-clone approach or whole genome shotgun sequencing, CAPSS requires relatively few library constructions and only minimal computational power for a complete genome assembly. The strategy is suitable for sequencing large genomes for which there are no sequence-ready maps, but for which relatively high resolution STS maps and highly redundant BAC libraries are available. It is immediately applicable to the sequencing of mouse, rat, zebra fish and other important genomes, and can be managed in a cooperative fashion to take advantage of the distributed international DNA sequencing capacity.
    • 已经开发了用于测序大基因组的简化策略。 克隆阵列池式霰弹枪测序(CAPSS)基于汇集排列的基因组克隆的行和列,用于霰弹枪库构建。 随机序列被累积,并且数据通过行和列的顺序比较来组装,以解决交叉点处的克隆序列。 与克隆克隆方法或全基因组鸟枪法测序相比,CAPSS需要相对较少的文库构建,并且对于完整的基因组装配仅需要最小的计算能力。 该策略适用于对没有序列准备图的大型基因组进行排序,但对于相对较高分辨率的STS图和高度冗余的BAC库可用。 它可以立即适用于小鼠,大鼠,斑马鱼等重要基因组的测序,可以以合作的方式管理,以利用分布式国际DNA测序能力。