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    • 11. 发明申请
    • PARALLEL ALGORITHM FOR MOLECULAR DYNAMICS SIMULATION
    • 用于分子动力学模拟的并行算法
    • US20140257769A1
    • 2014-09-11
    • US13950848
    • 2013-07-25
    • NVIDIA Corporation
    • Nikolay Sakharnykh
    • G06F19/00
    • G16C10/00
    • Systems and methods for MD simulation with significantly increased multithreaded parallelism. A substance body is divided into a plurality of cells. With respect to a current center cell, its neighbor particles can be partitioned into groups with groups processed in sequence by a dedicated CTA that comprises a plurality of warps. Within each CTA, each warp is assigned to process in parallel for a center particle in the center cell to calculate interaction forces between the center particle and the group of neighbor particles. Moreover different levels of the memory hierarchy in a system, including local memories, shared memories and global memory, are used to store intermediate and final results respectively.
    • 用于MD模拟的系统和方法显着增加了多线程并行性。 物质体分为多个细胞。 对于当前的中心单元,其相邻粒子可以被划分成具有通过包括多个经线的专用CTA依次处理的组的组。 在每个CTA中,每个翘曲被指定为并行处理中心单元中的中心粒子,以计算中心粒子和相邻粒子群之间的相互作用力。 此外,系统中的存储器层级的不同级别(包括本地存储器,共享存储器和全局存储器)分别用于存储中间和最终结果。
    • 14. 发明申请
    • COMBINED ON-LATTICE/OFF-LATTICE OPTIMIZATION METHOD FOR RIGID BODY DOCKING
    • 用于刚体锁定的组合式放大/关闭优化方法
    • US20120303289A1
    • 2012-11-29
    • US13513494
    • 2010-12-02
    • Anders Ohrn
    • Anders Ohrn
    • G06F19/00
    • G16C10/00G16B15/00G16C20/50
    • The invention provides a method of sampling conformation space for an interacting pair comprising (a) an approaching body characterized by an approaching body quaternion and (b) a central body characterized by a central body quaternion, wherein the interacting pair is characterized by an energy and a center of mass vector, the method comprising: (i) performing a first minimization of the energy by varying the approaching body quaternion through off-lattice transformations and then, sequentially, (ii) performing a first translation of the approaching body toward the central body along the center of mass vector, wherein the translation consists of an on-lattice transformation.
    • 本发明提供了一种用于相互作用对的构图空间采样的方法,包括(a)以接近身体四元数为特征的接近体,以及(b)以中心体四元数为特征的中心体,其中所述相互作用对的特征在于能量和 所述方法包括:(i)通过离散格子变换来改变接近的身体四元数,然后依次,(ii)执行接近的身体朝向中心的第一次平移来执行能量的第一最小化 身体沿着质量矢量的中心,其中翻译由点阵转换组成。
    • 16. 发明申请
    • SYSTEMS AND METHODS OF CALCULATING ELECTRON DYNAMICS USING SPIN-DEPENDENT QUANTUM TRAJECTORIES
    • 使用旋转相关量子轨迹计算电子动力学的系统和方法
    • US20100318331A1
    • 2010-12-16
    • US12484021
    • 2009-06-12
    • Burke Ritchie
    • Burke Ritchie
    • G06F17/10
    • G06F17/5009G06F2217/16G16C10/00G16C60/00
    • Methods and systems for calculating electron or ion dynamics using spin-dependent quantum trajectories are disclosed. According to one exemplary embodiment of the present invention, electron or ion dynamics are obtained by solving a set of equations for electrons' motion using spin-dependent quantum trajectories calculated from electron current with one equation for each electron in the atomic structure of a material of interest. The set of equations is time-dependent Schrödinger or Dirac equations for the nonrelativistic and relativistic regime, respectively. The electron current contains a set of spin-dependent terms that guarantee Fermi-Dirac statistics are obeyed. Steady state solution of the set of equations for electrons' motion is a set of wave functions in a three-dimensional space and in time. The spin-dependent quantum trajectories for each of the electrons are updated at each solution cycle, and therefore, mean-field approximation is avoided.
    • 公开了使用自旋相关量子轨迹计算电子或离子动力学的方法和系统。 根据本发明的一个示例性实施例,通过使用从电子电流计算的自旋相关量子轨迹求解电子运动的一组方程式获得电子或离子动力学,其中每个电子的原子结构中的每个电子具有一个方程 利益。 该组方程分别是非相对论和相对论制度的时间依赖性薛定er或狄拉克方程。 电子电流包含一系列依赖于自旋的条件,可以保证遵守费米狄拉克统计。 电子运动方程组的稳态解是三维空间中的一组波函数。 每个电子循环的每个电子的自旋相关量子轨迹被更新,因此避免了平均场近似。
    • 20. 发明申请
    • APPARATUS FOR COMPUTING A MANY-BODY PROBLEM
    • 用于计算多个身体问题的装置
    • US20080201121A1
    • 2008-08-21
    • US12033201
    • 2008-02-19
    • YUICHI YANO
    • YUICHI YANO
    • G06F17/10
    • G16C10/00
    • A many-body problem computing apparatus includes a coordinate storage unit for storing coordinates of the centers of gravity of residues which particles belong to, a gravity center distance computing unit for computing a distance between the coordinates of the center of gravity of a residue which a specific particle belongs to and the coordinates of the center of gravity of a residue which the other particles belong to, and a distance comparison unit for comparing the distance computed by the distance computing unit with a cut-off distance and giving instructions to compute a force or potential if the distance is less than the cut-off distance.
    • 多体问题计算装置包括:坐标存储单元,用于存储粒子所属残余物重心的坐标;重心距离计算单元,用于计算残留物的重心坐标之间的距离, 特定粒子属于其他颗粒所属的残留物的重心坐标,以及距离比较单元,用于将由距离计算单元计算出的距离与截止距离进行比较,并给出计算力的指令 或距离小于截止距离的电位。