A pair of fuel cells are configured as a hydrogen purity monitor. A first cell, acting as a reference cell, is configured to generate electrical current from the electrochemical reaction of hydrogen and oxidant and has a first fuel inlet configured to receive hydrogen from a first hydrogen source. A second fuel cell, acting as a test cell, is configured to generate electrical current from the electrochemical reaction of hydrogen and oxidant and has a second fuel inlet configured to receive hydrogen from a second hydrogen source. A control system is configured to apply an electrical load to each fuel cell and determine an electrical output of each fuel cell. The control system has a comparator for comparing the electrical outputs of the first and second fuel cells and a purity monitor output configured to give an indication of hydrogen purity based on an output of the comparator.