The invention discloses an endemic area clinical data analyzing method. The endemic area clinical data analyzing method comprises the following steps: collecting information, integrating and processing the information, integrating and classifying the collected information, classifying basic medical problems from a patient terminal, allocating the problems to different departments, and displaying on a doctor terminal and a nurse terminal; extracting information, integrating extracted data, and extracting basic information; combining the integrated and processed information and the extracted basic information, storing the combined information in a database in a classified way; judging whether to send an inquiry request to a system through the patient terminal or not, if so, analyzing content of the request information, transmitting the content of the request information to the database, calling relevant information from the database, and otherwise, ending; judging whether the patient terminal has a report generating request or not, if so, generating a report and downloading or printing; otherwise, ending. By adopting the endemic area clinical data analyzing method and system, the suggestion accuracy is increased, and the utilization ratio and quality of clinical information are improved.